Detail information of GWHGAAZE009846


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009587784.10PREDICTED: bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase, chloroplastic-like isoform X2 [Nicotiana tomentosiformis]
Swissprottr|Q9SQT8|DHQSD_ARATH2E-135Shikimate dehydrogenase (Precursor)
trEMBLtr|A0A068U4W5|A0A068U4W5_COFCA0Coffea canephora DH200=94 genomic scaffold, scaffold_11 {ECO:0000313|EMBL:CDP03556.1}
TAIR10AT3G06350.18E-111dehydroquinate dehydratase, putative / shikimate dehydrogenase, putative

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene118477904118481473-
GWHAAZE00000002mRNA118477904118481473-
GWHAAZE00000002exon118481399118481473-
GWHAAZE00000002exon118480735118480953-
GWHAAZE00000002exon118480054118480394-
GWHAAZE00000002exon118479825118479875-
GWHAAZE00000002exon118479675118479738-
GWHAAZE00000002exon118479242118479350-
GWHAAZE00000002exon118478820118478969-
GWHAAZE00000002exon118478592118478740-
GWHAAZE00000002exon118477904118478500-
GWHAAZE00000002CDS118481399118481473-
GWHAAZE00000002CDS118480735118480953-
GWHAAZE00000002CDS118480054118480394-
GWHAAZE00000002CDS118479825118479875-
GWHAAZE00000002CDS118479675118479738-
GWHAAZE00000002CDS118479242118479350-
GWHAAZE00000002CDS118478820118478969-
GWHAAZE00000002CDS118478592118478740-
GWHAAZE00000002CDS118478309118478500-
GWHAAZE00000002three_prime_UTR118477904118478308-
Transcript Sequence

Network for GWHGAAZE009846

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01487.16DHquinase_I31472.70E-28
PF08501.12Shikimate_dh_N1612111.20E-07
PF08501.12Shikimate_dh_N2292583.90E-07
PF01488.21Shikimate_DH3013701.10E-06
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K13832aroDE, DHQ-SDH Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Biosynthesis of amino acidsmap01230
Phenylalanine, tyrosine and tryptophan biosynthesismap00400

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0004764molecular_functionshikimate 3-dehydrogenase (NADP+) activity
GO:0003824molecular_functioncatalytic activity
GO:0003855molecular_function3-dehydroquinate dehydratase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf5.290
SRR3591706second leaf27.207
SRR3591707mature leaf22.276
SRR3591708Shoot apex18.499
SRR3591709Stem2.080
SRR3591710White floral bud1.510
SRR3591711White flower1.070
SRR3591712Green floral bud21.699
SRR3591713Yellow flower0.754
SRP173429 SRR8316895Juvenile bud stage 27.664
SRR8316896Juvenile bud stage 43.701
SRR8316897Juvenile bud stage 36.127
SRR8316894Third green stage 11.943
SRR8316900Third green stage 21.271
SRR8316901Third green stage 15.774
SRR8316898Complete white stage 0.177
SRR8316899Complete white stage 2.953
SRR8316903Complete white stage 0.139
SRR8316902Silver flowering stage0.895
SRR8316904Silver flowering stage1.966
SRR8316905Silver flowering stage0.051
SRR8316906Gold flowering stage 0.247
SRR8316907Gold flowering stage 0.121
SRR8316908Gold flowering stage 0.472
SRP132670SRR6706286Control27.142
SRR6706287Light intensity 50%26.771
SRR6706288Light intensity 20%30.648
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.535
CNS0095593Slightly white alabastrum(diploid) 23.655
CNS0095594Slightly white alabastrum(diploid) 316.235
CNS0095595Whole white alabastrum(diploid) 21.623
CNS0095596Whole white alabastrum(diploid) 32.899
CNS0095597Whole white alabastrum(diploid) 42.989
CNS0095598Silvery flower (diploied) 10.459
CNS0095599Silvery flower (diploied) 21.163
CNS0095600Silvery flower (diploied) 30.931
CNS0095601Golden flower (diploid) 10.874
CNS0095602Golden flower (diploid) 20.405
CNS0095603Golden flower (diploid) 30.760
CNS0095604Slightly white alabastrum(tetraploid) 127.979
CNS0095605Slightly white alabastrum(tetraploid) 228.909
CNS0095606Slightly white alabastrum(tetraploid) 350.600
CNS0095607Whole white alabastrum(tetraploid) 15.037
CNS0095608Whole white alabastrum(tetraploid) 24.440
CNS0095609Whole white alabastrum(tetraploid) 3100.506
CNS0095610Silvery flower (tetraploid) 10.751
CNS0095611Silvery flower (tetraploid) 21.260
CNS0095612Silvery flower (tetraploid) 30.429
CNS0095613Golden flower (tetraploid) 10.408
CNS0095614Golden flower (tetraploid) 20.392
CNS0095615Golden flower (tetraploid) 30.162
CRA001975CRR073297Stem 137.047
CRR073298Stem 236.035
CRR073299Stem 335.764
CRR073300Leaf 16.886
CRR073301Leaf 27.484
CRR073302Leaf 310.494
CRR073303Juvenile bud 11.833
CRR073304Juvenile bud 20.463
CRR073305Juvenile bud 32.108
CRR073306Third green 10.049
CRR073307Third green 20.000
CRR073308Third green 30.065
CRR073309Second white 10.000
CRR073310Second white 20.637
CRR073311Second white 30.088
CRR073312Silver flowering 10.378
CRR073313Silver flowering 20.539
CRR073314Silver flowering 30.530
CRR073315Gold flowering 15.413
CRR073316Gold flowering 24.825
CRR073317Gold flowering 34.950
CRR073318Tawny withering 10.000
CRR073319Tawny withering 20.177
CRR073320Tawny withering 30.156