Detail information of GWHGAAZE009856


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009629413.16.4873E-153PREDICTED: zinc finger protein CONSTANS-LIKE 13 isoform X2 [Nicotiana tomentosiformis]
Swissprottr|O82256|COL13_ARATH6E-96Zinc finger protein CONSTANS-LIKE 13
trEMBLtr|M1AT27|M1AT27_SOLTU3E-144Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400029591}
TAIR10AT2G47890.12E-70B-box type zinc finger protein with CCT domain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene118665100118668629-
GWHAAZE00000002mRNA118665100118668629-
GWHAAZE00000002exon118665100118665494-
GWHAAZE00000002exon118666095118666372-
GWHAAZE00000002exon118667094118667393-
GWHAAZE00000002exon118667982118668629-
GWHAAZE00000002five_prime_UTR118668573118668629-
GWHAAZE00000002CDS118667982118668572-
GWHAAZE00000002CDS118667094118667393-
GWHAAZE00000002CDS118666095118666372-
GWHAAZE00000002CDS118665404118665494-
GWHAAZE00000002three_prime_UTR118665100118665403-
Transcript Sequence

Network for GWHGAAZE009856

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00643.25zf-B_box25681.20E-05
PF00643.25zf-B_box701132.50E-07
PF06203.15CCT3754162.40E-14
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC2C2-CO-like

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0008270molecular_functionzinc ion binding
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf19.153
SRR3591706second leaf52.326
SRR3591707mature leaf46.838
SRR3591708Shoot apex43.652
SRR3591709Stem29.861
SRR3591710White floral bud45.970
SRR3591711White flower66.662
SRR3591712Green floral bud46.844
SRR3591713Yellow flower57.742
SRP173429 SRR8316895Juvenile bud stage 24.979
SRR8316896Juvenile bud stage 28.734
SRR8316897Juvenile bud stage 18.445
SRR8316894Third green stage 16.727
SRR8316900Third green stage 46.365
SRR8316901Third green stage 43.009
SRR8316898Complete white stage 14.478
SRR8316899Complete white stage 57.458
SRR8316903Complete white stage 29.429
SRR8316902Silver flowering stage27.584
SRR8316904Silver flowering stage38.072
SRR8316905Silver flowering stage20.489
SRR8316906Gold flowering stage 66.074
SRR8316907Gold flowering stage 56.755
SRR8316908Gold flowering stage 65.271
SRP132670SRR6706286Control55.191
SRR6706287Light intensity 50%48.720
SRR6706288Light intensity 20%50.480
CNP0000432CNS0095592Slightly white alabastrum(diploid) 139.458
CNS0095593Slightly white alabastrum(diploid) 239.214
CNS0095594Slightly white alabastrum(diploid) 338.495
CNS0095595Whole white alabastrum(diploid) 241.874
CNS0095596Whole white alabastrum(diploid) 337.455
CNS0095597Whole white alabastrum(diploid) 435.457
CNS0095598Silvery flower (diploied) 196.669
CNS0095599Silvery flower (diploied) 273.914
CNS0095600Silvery flower (diploied) 385.107
CNS0095601Golden flower (diploid) 188.203
CNS0095602Golden flower (diploid) 297.615
CNS0095603Golden flower (diploid) 391.440
CNS0095604Slightly white alabastrum(tetraploid) 132.998
CNS0095605Slightly white alabastrum(tetraploid) 230.846
CNS0095606Slightly white alabastrum(tetraploid) 347.857
CNS0095607Whole white alabastrum(tetraploid) 126.087
CNS0095608Whole white alabastrum(tetraploid) 227.126
CNS0095609Whole white alabastrum(tetraploid) 339.406
CNS0095610Silvery flower (tetraploid) 183.155
CNS0095611Silvery flower (tetraploid) 288.087
CNS0095612Silvery flower (tetraploid) 352.858
CNS0095613Golden flower (tetraploid) 160.983
CNS0095614Golden flower (tetraploid) 283.179
CNS0095615Golden flower (tetraploid) 360.888
CRA001975CRR073297Stem 157.996
CRR073298Stem 257.079
CRR073299Stem 353.093
CRR073300Leaf 159.484
CRR073301Leaf 263.094
CRR073302Leaf 350.146
CRR073303Juvenile bud 160.711
CRR073304Juvenile bud 236.109
CRR073305Juvenile bud 373.611
CRR073306Third green 16.581
CRR073307Third green 24.552
CRR073308Third green 37.375
CRR073309Second white 117.447
CRR073310Second white 215.622
CRR073311Second white 313.460
CRR073312Silver flowering 15.500
CRR073313Silver flowering 28.654
CRR073314Silver flowering 37.887
CRR073315Gold flowering 163.514
CRR073316Gold flowering 269.276
CRR073317Gold flowering 370.154
CRR073318Tawny withering 135.982
CRR073319Tawny withering 242.165
CRR073320Tawny withering 331.267