Detail information of GWHGAAZE009857


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAEA86318.14.59381E-60RING finger and CHY zinc finger domain-containing protein [Solanum nigrum]
trEMBLtr|F4YBC1|F4YBC1_SOLNI2E-60RING finger and CHY zinc finger domain-containing protein {ECO:0000313|EMBL:AEA86318.1} (Fragment)
TAIR10AT5G18650.12E-42CHY-type/CTCHY-type/RING-type Zinc finger protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene118673344118677622-
GWHAAZE00000002mRNA118673344118677622-
GWHAAZE00000002exon118677528118677622-
GWHAAZE00000002exon118676949118676981-
GWHAAZE00000002exon118676150118676190-
GWHAAZE00000002exon118675365118675447-
GWHAAZE00000002exon118675192118675283-
GWHAAZE00000002exon118675013118675082-
GWHAAZE00000002exon118673344118673382-
GWHAAZE00000002CDS118677528118677622-
GWHAAZE00000002CDS118676949118676981-
GWHAAZE00000002CDS118676150118676190-
GWHAAZE00000002CDS118675365118675447-
GWHAAZE00000002CDS118675192118675283-
GWHAAZE00000002CDS118675013118675082-
GWHAAZE00000002CDS118673344118673382-
Transcript Sequence

Network for GWHGAAZE009857

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13639.7zf-RING_2781218.50E-08
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
K10144RCHY1, PIRH2 Ubiquitin mediated proteolysis map04120
p53 signaling pathwaymap04115

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf16.098
SRR3591706second leaf10.120
SRR3591707mature leaf21.075
SRR3591708Shoot apex23.225
SRR3591709Stem20.143
SRR3591710White floral bud94.142
SRR3591711White flower149.127
SRR3591712Green floral bud27.214
SRR3591713Yellow flower232.282
SRP173429 SRR8316895Juvenile bud stage 13.035
SRR8316896Juvenile bud stage 22.413
SRR8316897Juvenile bud stage 9.891
SRR8316894Third green stage 7.268
SRR8316900Third green stage 17.869
SRR8316901Third green stage 20.390
SRR8316898Complete white stage 18.530
SRR8316899Complete white stage 27.984
SRR8316903Complete white stage 27.680
SRR8316902Silver flowering stage59.309
SRR8316904Silver flowering stage63.371
SRR8316905Silver flowering stage29.854
SRR8316906Gold flowering stage 127.172
SRR8316907Gold flowering stage 132.760
SRR8316908Gold flowering stage 121.549
SRP132670SRR6706286Control18.981
SRR6706287Light intensity 50%18.939
SRR6706288Light intensity 20%21.083
CNP0000432CNS0095592Slightly white alabastrum(diploid) 120.126
CNS0095593Slightly white alabastrum(diploid) 213.379
CNS0095594Slightly white alabastrum(diploid) 317.607
CNS0095595Whole white alabastrum(diploid) 217.508
CNS0095596Whole white alabastrum(diploid) 317.732
CNS0095597Whole white alabastrum(diploid) 415.614
CNS0095598Silvery flower (diploied) 163.481
CNS0095599Silvery flower (diploied) 251.768
CNS0095600Silvery flower (diploied) 382.654
CNS0095601Golden flower (diploid) 179.236
CNS0095602Golden flower (diploid) 293.955
CNS0095603Golden flower (diploid) 384.995
CNS0095604Slightly white alabastrum(tetraploid) 114.549
CNS0095605Slightly white alabastrum(tetraploid) 211.493
CNS0095606Slightly white alabastrum(tetraploid) 314.337
CNS0095607Whole white alabastrum(tetraploid) 114.637
CNS0095608Whole white alabastrum(tetraploid) 212.543
CNS0095609Whole white alabastrum(tetraploid) 312.663
CNS0095610Silvery flower (tetraploid) 1119.006
CNS0095611Silvery flower (tetraploid) 283.127
CNS0095612Silvery flower (tetraploid) 391.054
CNS0095613Golden flower (tetraploid) 1163.467
CNS0095614Golden flower (tetraploid) 2126.719
CNS0095615Golden flower (tetraploid) 3131.916
CRA001975CRR073297Stem 134.114
CRR073298Stem 232.479
CRR073299Stem 317.190
CRR073300Leaf 123.447
CRR073301Leaf 220.653
CRR073302Leaf 322.461
CRR073303Juvenile bud 121.701
CRR073304Juvenile bud 218.841
CRR073305Juvenile bud 316.807
CRR073306Third green 113.081
CRR073307Third green 215.699
CRR073308Third green 314.834
CRR073309Second white 141.312
CRR073310Second white 242.175
CRR073311Second white 344.213
CRR073312Silver flowering 161.125
CRR073313Silver flowering 269.368
CRR073314Silver flowering 366.541
CRR073315Gold flowering 122.833
CRR073316Gold flowering 229.188
CRR073317Gold flowering 317.184
CRR073318Tawny withering 117.443
CRR073319Tawny withering 221.654
CRR073320Tawny withering 316.015