Detail information of GWHGAAZE009862


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_009776613.13.2802E-170PREDICTED: zinc finger CCCH domain-containing protein 32-like isoform X1 [Nicotiana sylvestris]
Swissprottr|Q84W91|C3H32_ARATH2E-147Zinc finger CCCH domain-containing protein 32
trEMBLtr|M1A347|M1A347_SOLTU6E-169Uncharacterized protein {ECO:0000313|EnsemblPlants:PGSC0003DMT400013646}
TAIR10AT2G47850.32E-120Zinc finger C-x8-C-x5-C-x3-H type family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene118754651118756856-
GWHAAZE00000002mRNA118754651118756856-
GWHAAZE00000002exon118756759118756856-
GWHAAZE00000002exon118756471118756613-
GWHAAZE00000002exon118755803118755868-
GWHAAZE00000002exon118755527118755646-
GWHAAZE00000002exon118755139118755429-
GWHAAZE00000002exon118754651118755019-
GWHAAZE00000002five_prime_UTR118756841118756856-
GWHAAZE00000002CDS118756759118756840-
GWHAAZE00000002CDS118756471118756613-
GWHAAZE00000002CDS118755803118755868-
GWHAAZE00000002CDS118755527118755646-
GWHAAZE00000002CDS118755139118755429-
GWHAAZE00000002CDS118754651118755019-
Transcript Sequence

Network for GWHGAAZE009862

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00642.25zf-CCCH46716.00E-09
PF00642.25zf-CCCH931172.70E-10
PF00642.25zf-CCCH1381631.60E-09
PF00642.25zf-CCCH2953197.50E-11
Protein Sequence

Gene family

Gene familysubfamily
Transcription Factors FamilyC3H

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf22.666
SRR3591706second leaf23.968
SRR3591707mature leaf23.129
SRR3591708Shoot apex30.687
SRR3591709Stem20.906
SRR3591710White floral bud29.813
SRR3591711White flower19.781
SRR3591712Green floral bud30.982
SRR3591713Yellow flower15.472
SRP173429 SRR8316895Juvenile bud stage 16.078
SRR8316896Juvenile bud stage 25.882
SRR8316897Juvenile bud stage 10.566
SRR8316894Third green stage 10.392
SRR8316900Third green stage 36.218
SRR8316901Third green stage 39.138
SRR8316898Complete white stage 5.985
SRR8316899Complete white stage 32.642
SRR8316903Complete white stage 10.541
SRR8316902Silver flowering stage5.484
SRR8316904Silver flowering stage7.723
SRR8316905Silver flowering stage3.497
SRR8316906Gold flowering stage 11.068
SRR8316907Gold flowering stage 11.952
SRR8316908Gold flowering stage 10.672
SRP132670SRR6706286Control25.812
SRR6706287Light intensity 50%25.885
SRR6706288Light intensity 20%26.274
CNP0000432CNS0095592Slightly white alabastrum(diploid) 132.953
CNS0095593Slightly white alabastrum(diploid) 232.682
CNS0095594Slightly white alabastrum(diploid) 335.185
CNS0095595Whole white alabastrum(diploid) 252.627
CNS0095596Whole white alabastrum(diploid) 364.155
CNS0095597Whole white alabastrum(diploid) 462.731
CNS0095598Silvery flower (diploied) 132.104
CNS0095599Silvery flower (diploied) 225.166
CNS0095600Silvery flower (diploied) 324.186
CNS0095601Golden flower (diploid) 136.541
CNS0095602Golden flower (diploid) 237.206
CNS0095603Golden flower (diploid) 335.911
CNS0095604Slightly white alabastrum(tetraploid) 150.515
CNS0095605Slightly white alabastrum(tetraploid) 251.154
CNS0095606Slightly white alabastrum(tetraploid) 335.773
CNS0095607Whole white alabastrum(tetraploid) 164.662
CNS0095608Whole white alabastrum(tetraploid) 260.577
CNS0095609Whole white alabastrum(tetraploid) 343.287
CNS0095610Silvery flower (tetraploid) 116.433
CNS0095611Silvery flower (tetraploid) 225.591
CNS0095612Silvery flower (tetraploid) 320.883
CNS0095613Golden flower (tetraploid) 19.562
CNS0095614Golden flower (tetraploid) 218.498
CNS0095615Golden flower (tetraploid) 318.534
CRA001975CRR073297Stem 143.251
CRR073298Stem 239.246
CRR073299Stem 340.020
CRR073300Leaf 150.262
CRR073301Leaf 242.878
CRR073302Leaf 334.789
CRR073303Juvenile bud 136.293
CRR073304Juvenile bud 226.360
CRR073305Juvenile bud 327.797
CRR073306Third green 116.723
CRR073307Third green 214.191
CRR073308Third green 315.538
CRR073309Second white 17.665
CRR073310Second white 28.991
CRR073311Second white 38.486
CRR073312Silver flowering 113.311
CRR073313Silver flowering 217.548
CRR073314Silver flowering 314.125
CRR073315Gold flowering 114.614
CRR073316Gold flowering 219.249
CRR073317Gold flowering 312.433
CRR073318Tawny withering 136.228
CRR073319Tawny withering 233.159
CRR073320Tawny withering 341.579