Gene detail

Detail information of GWHGAAZE009865

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007050821.1	4.3058E-147	Mitochondrial transcription termination factor family protein [Theobroma cacao]
trEMBL	tr\|A0A061DY70\|A0A061DY70_THECC	2E-147	Mitochondrial transcription termination factor family protein {ECO:0000313\|EMBL:EOX94978.1}
TAIR10	AT5G07900.1	1E-109	Mitochondrial transcription termination factor family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	118810325	118811554	+
GWHAAZE00000002	mRNA	118810325	118811554	+
GWHAAZE00000002	exon	118810325	118811554	+
GWHAAZE00000002	CDS	118810325	118811554	+

Transcript Sequence
>GWHTAAZE009877 ATGCTTTCTGTACGTATTTCTTGCAAACTCTTTGCTTTACATTTCACAACCCCACTTGTTTCTACTAACAATTTTCGATCAATTTTTTCTACAAAGCTTCCTTGTCTCACAACCATCAATTTCCCTAGGTTGTATACAGAATGTTCCACCTCTACTGCAGTTTTAGACCCCATTATTGTCTCTAATGATTCTTTAAATCAAGACTCATTCACGGTCTCTTATCTTATAAATTCATGTGGGTTGTCACCAGAAACTGCTATCTATACTTCTGAAAGGGTACATTTGAAAACCCTAGAGAATCCAGAATCTGTTCTTAACCTTCTCAAGAATATTGGATTCAGCAAAACCCAGATCGCCAAAGTTGTTAGAAAACGCCCTAGGCTTCTTTTAGCCAATCCTGAGAAAACCCTTTTGCCCAAATTCCAGTTCTTGCAATCCATGGGGATTTCAAATACTGATATTGCAAAGGTCCTTTCAACAGAACCTACTTTCTTGATAAGGAGCATGGAGAATTACATTATACCTTGTTATAATTTCCTCAAGAGTGTGCTCCAATCCGATGAAAAGATTATTTACTGTATGAAGCGAGCGCCATGGGTTTTTGTAGAAGATTATACCAAGAAACTCATTCCGAATGTCAGGTTTTTGAGGGAATTTGGAATGAAAGAATCGTGTATCGTATTATTGCTGACTCATTTCCCCGAGGTTGTAATGCGAAGGCCTGAAGACTTTAGGAGCACTGTTGTCGAGGTCTCTGAATTGGGGTTTGATCCTTTGAAATCAACGTTTGTGTTTGCGCTGCATGTTTTATCGGGGGATAGTAATAAATCAATTAGGGATAGGTGTTACAAGGCTTATAAGAAGTGGGGTTGGTCTGAGGATGAGATTATATTGGCGTTTAGGAAGCATCCTAATTGTATGATTATGTCTGAGAAGAAACTTTCAAGATCAATGGACTTTTTGGTCAACAAGATGGGCTTCCCGTCTCAAGAAATTGCTAGCTACCCCTTGGTTCTATGCTTCAGCTTTGAGAAAAGGATTTTGCCTAGGTGTTGTGTTTATCAAGTCTTATCATTGAAGGGTTTGATAAAGAAAGATTTGAGCTTGACTAGGCTGTTGATACATGAAGAGAAGTACTTCTTGGAGAAGTTTGTGACAAAATATGAGGACAAAGTACCTCAACTGTTGGATGTATATCAAGGGAAGGCTGACCCTTTAGAATTAATGTAA

Network for GWHGAAZE009865

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02536.15	mTERF	105	257	1.30E-26
PF02536.15	mTERF	276	380	1.10E-17

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	mTERF

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0006355	biological_process	regulation of transcription, DNA-templated
GO:0003690	molecular_function	double-stranded DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.383
	SRR3591706	second leaf	0.830
	SRR3591707	mature leaf	1.626
	SRR3591708	Shoot apex	3.140
	SRR3591709	Stem	0.971
	SRR3591710	White floral bud	0.966
	SRR3591711	White flower	2.754
	SRR3591712	Green floral bud	2.922
	SRR3591713	Yellow flower	1.496
SRP173429	SRR8316895	Juvenile bud stage	0.566
	SRR8316896	Juvenile bud stage	1.575
	SRR8316897	Juvenile bud stage	0.350
	SRR8316894	Third green stage	0.338
	SRR8316900	Third green stage	1.421
	SRR8316901	Third green stage	0.964
	SRR8316898	Complete white stage	0.805
	SRR8316899	Complete white stage	2.264
	SRR8316903	Complete white stage	0.358
	SRR8316902	Silver flowering stage	0.626
	SRR8316904	Silver flowering stage	1.084
	SRR8316905	Silver flowering stage	0.367
	SRR8316906	Gold flowering stage	1.951
	SRR8316907	Gold flowering stage	1.312
	SRR8316908	Gold flowering stage	0.558
SRP132670	SRR6706286	Control	0.584
	SRR6706287	Light intensity 50%	0.532
	SRR6706288	Light intensity 20%	0.588
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.648
	CNS0095593	Slightly white alabastrum(diploid) 2	0.454
	CNS0095594	Slightly white alabastrum(diploid) 3	0.968
	CNS0095595	Whole white alabastrum(diploid) 2	0.599
	CNS0095596	Whole white alabastrum(diploid) 3	1.003
	CNS0095597	Whole white alabastrum(diploid) 4	0.422
	CNS0095598	Silvery flower (diploied) 1	1.126
	CNS0095599	Silvery flower (diploied) 2	0.951
	CNS0095600	Silvery flower (diploied) 3	1.212
	CNS0095601	Golden flower (diploid) 1	0.564
	CNS0095602	Golden flower (diploid) 2	1.295
	CNS0095603	Golden flower (diploid) 3	1.312
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.863
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.607
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.639
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.670
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.581
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.392
	CNS0095610	Silvery flower (tetraploid) 1	1.226
	CNS0095611	Silvery flower (tetraploid) 2	1.597
	CNS0095612	Silvery flower (tetraploid) 3	0.911
	CNS0095613	Golden flower (tetraploid) 1	0.385
	CNS0095614	Golden flower (tetraploid) 2	1.190
	CNS0095615	Golden flower (tetraploid) 3	0.695
CRA001975	CRR073297	Stem 1	0.331
	CRR073298	Stem 2	0.675
	CRR073299	Stem 3	0.295
	CRR073300	Leaf 1	0.499
	CRR073301	Leaf 2	0.293
	CRR073302	Leaf 3	0.591
	CRR073303	Juvenile bud 1	0.035
	CRR073304	Juvenile bud 2	0.365
	CRR073305	Juvenile bud 3	0.328
	CRR073306	Third green 1	0.000
	CRR073307	Third green 2	0.106
	CRR073308	Third green 3	0.095
	CRR073309	Second white 1	0.445
	CRR073310	Second white 2	0.240
	CRR073311	Second white 3	0.678
	CRR073312	Silver flowering 1	0.357
	CRR073313	Silver flowering 2	0.357
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.387
	CRR073316	Gold flowering 2	0.385
	CRR073317	Gold flowering 3	0.493
	CRR073318	Tawny withering 1	0.636
	CRR073319	Tawny withering 2	0.548
	CRR073320	Tawny withering 3	0.829