Gene detail

Detail information of GWHGAAZE009880

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002267192.1	0	PREDICTED: dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase isoform X1 [Vitis vinifera]
Swissprot	tr\|O82244\|ALG3_ARATH	0	Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase
trEMBL	tr\|D7U263\|D7U263_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CBI36829.3}
TAIR10	AT2G47760.1	3E-143	asparagine-linked glycosylation 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	119071980	119075945	+
GWHAAZE00000002	mRNA	119071980	119075945	+
GWHAAZE00000002	exon	119071980	119072130	+
GWHAAZE00000002	exon	119072225	119072259	+
GWHAAZE00000002	exon	119072375	119072512	+
GWHAAZE00000002	exon	119073260	119073328	+
GWHAAZE00000002	exon	119073709	119073866	+
GWHAAZE00000002	exon	119073950	119074016	+
GWHAAZE00000002	exon	119074120	119074173	+
GWHAAZE00000002	exon	119074381	119074469	+
GWHAAZE00000002	exon	119074857	119074973	+
GWHAAZE00000002	exon	119075071	119075201	+
GWHAAZE00000002	exon	119075360	119075438	+
GWHAAZE00000002	exon	119075617	119075673	+
GWHAAZE00000002	exon	119075774	119075945	+
GWHAAZE00000002	CDS	119071980	119072130	+
GWHAAZE00000002	CDS	119072225	119072259	+
GWHAAZE00000002	CDS	119072375	119072512	+
GWHAAZE00000002	CDS	119073260	119073328	+
GWHAAZE00000002	CDS	119073709	119073866	+
GWHAAZE00000002	CDS	119073950	119074016	+
GWHAAZE00000002	CDS	119074120	119074173	+
GWHAAZE00000002	CDS	119074381	119074469	+
GWHAAZE00000002	CDS	119074857	119074973	+
GWHAAZE00000002	CDS	119075071	119075201	+
GWHAAZE00000002	CDS	119075360	119075438	+
GWHAAZE00000002	CDS	119075617	119075673	+
GWHAAZE00000002	CDS	119075774	119075945	+

Transcript Sequence
>GWHTAAZE009892 ATGGCAGTCCAATCGATTACCAAGCCTGAACCCTCGCAAAGATCAGAAACTTTGATTACTAAAATTAGCAAAAACAGAAAATTAGCATTTGCTTTTGCATTGCTTTTTGCTGATGCGCTCTTTGTTGCCCTTATCATTGCCTACATCCCTTATACAAAGATCGATTGGGATGCATATATGTCACAGGTTAGTGGGTTTCTTGAAGGAGAGAGGGACTATGGAAAGCTTCAAGGCGACACAGGGCCTTTGGTCTACCCTGCTGGCTTCCTATATATATATTCTGCTATACGTTTTGTTACTGGAGGTCTGGTCTACCCTGCTCAGATTCTATTCGGCCTTCTCTACATTGTGAATCTTGGAATTGTCTTGTTCATCTATATGAAGACTGATGTGCTTCCATGGTGGGCCCTTTCTTTGCTTTGTTTATCTAAAAGGATTCATTCAATCTTTGTGCTTCGTTTGTTCAATGATTGTCTTGCCATGACACTTCTCCATGCTTCATTGATTTCACTTCTTTACCAAAAGTGGAATCTAGGTTTGATTATTTTCAGTGGAGCTGTATCAATAAAGATGAATGTACTCCTCTATGTACCAACTTTACTACTACTCATGCTTAAGGCTATGGATATATCCGGGGTGATATTGGCTTTAGCAGGGGCAGCATTCGTTCAGATTCTGGTAGGGCTGCCTTTTCTACTGTCATCTCCAGTTTCATATATATCAAGAGCCTTTAATCTTGGACGCGTGTTCATCCACTTTTGGTCTGTGAACTTCAAATTTGTTCCTGAATCTATTTTTGTATCAAGGGCATTTGCAATCTCCTTACTAGTTACCCATCTCATTCTACTGGCAGTTTTTAGTCATTATAAGTGGTGCAAGCATGAAGGAGGACTATTCTCTTTCCTGCATTCTAGATTTGTTCTAATGAAGCTAGCCATTGTTAAAAGATCCAGCTCTCCTGAACAAATTTACAACCTCAACTCATCCTGCAAGCTTCTCCGAGAAGACCATATTGTAACTACCATGTTTGTTGGGAATTTCATTGGCATTGTATGCGCCCGGTCCTTGCATTATCAATTCTACTCATGGTATTTCTATTCCTTACCATACATGTTGTGGAAAACACCTTTTCCTACATTTTTGCGCTTACTTTTGTTTATAGGGGTGGAATTTTGCTGGAATGTGTATCCCTCAAACATGTATTCATCAGCTGTACTCCTTTCCACTCACTTGCTGATACTGTGGGGTCTCTGGACTGCTCCACCGGAGTCCCCTTATGTTGATGATAATTCATCAACCAGAAAGAAGCGCAAATGA

Network for GWHGAAZE009880

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05208.14	ALG3	33	403	8.20E-135

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03845	ALG3	Metabolic pathways	map01100
		N-Glycan biosynthesis	map00510
		Various types of N-glycan biosynthesis	map00513

Gene Ontology

GO term	Ontology	Name
GO:0030176	cellular_component	integral component of endoplasmic reticulum membrane
GO:0000030	molecular_function	mannosyltransferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	29.558
	SRR3591706	second leaf	17.845
	SRR3591707	mature leaf	18.482
	SRR3591708	Shoot apex	27.017
	SRR3591709	Stem	25.761
	SRR3591710	White floral bud	23.622
	SRR3591711	White flower	24.256
	SRR3591712	Green floral bud	30.375
	SRR3591713	Yellow flower	17.118
SRP173429	SRR8316895	Juvenile bud stage	19.037
	SRR8316896	Juvenile bud stage	26.820
	SRR8316897	Juvenile bud stage	14.074
	SRR8316894	Third green stage	12.396
	SRR8316900	Third green stage	28.652
	SRR8316901	Third green stage	25.794
	SRR8316898	Complete white stage	6.679
	SRR8316899	Complete white stage	30.832
	SRR8316903	Complete white stage	13.007
	SRR8316902	Silver flowering stage	7.359
	SRR8316904	Silver flowering stage	10.447
	SRR8316905	Silver flowering stage	4.519
	SRR8316906	Gold flowering stage	14.204
	SRR8316907	Gold flowering stage	14.305
	SRR8316908	Gold flowering stage	14.681
SRP132670	SRR6706286	Control	15.137
	SRR6706287	Light intensity 50%	14.346
	SRR6706288	Light intensity 20%	17.291
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	21.391
	CNS0095593	Slightly white alabastrum(diploid) 2	22.325
	CNS0095594	Slightly white alabastrum(diploid) 3	19.037
	CNS0095595	Whole white alabastrum(diploid) 2	15.986
	CNS0095596	Whole white alabastrum(diploid) 3	14.388
	CNS0095597	Whole white alabastrum(diploid) 4	11.569
	CNS0095598	Silvery flower (diploied) 1	28.433
	CNS0095599	Silvery flower (diploied) 2	20.673
	CNS0095600	Silvery flower (diploied) 3	19.003
	CNS0095601	Golden flower (diploid) 1	18.897
	CNS0095602	Golden flower (diploid) 2	19.520
	CNS0095603	Golden flower (diploid) 3	17.192
	CNS0095604	Slightly white alabastrum(tetraploid) 1	21.485
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.820
	CNS0095606	Slightly white alabastrum(tetraploid) 3	36.525
	CNS0095607	Whole white alabastrum(tetraploid) 1	12.656
	CNS0095608	Whole white alabastrum(tetraploid) 2	9.305
	CNS0095609	Whole white alabastrum(tetraploid) 3	22.700
	CNS0095610	Silvery flower (tetraploid) 1	19.651
	CNS0095611	Silvery flower (tetraploid) 2	22.272
	CNS0095612	Silvery flower (tetraploid) 3	10.409
	CNS0095613	Golden flower (tetraploid) 1	10.011
	CNS0095614	Golden flower (tetraploid) 2	19.397
	CNS0095615	Golden flower (tetraploid) 3	10.170
CRA001975	CRR073297	Stem 1	7.283
	CRR073298	Stem 2	7.779
	CRR073299	Stem 3	5.349
	CRR073300	Leaf 1	7.555
	CRR073301	Leaf 2	5.039
	CRR073302	Leaf 3	6.550
	CRR073303	Juvenile bud 1	5.816
	CRR073304	Juvenile bud 2	3.689
	CRR073305	Juvenile bud 3	5.218
	CRR073306	Third green 1	0.677
	CRR073307	Third green 2	0.492
	CRR073308	Third green 3	0.818
	CRR073309	Second white 1	1.321
	CRR073310	Second white 2	1.364
	CRR073311	Second white 3	0.897
	CRR073312	Silver flowering 1	1.211
	CRR073313	Silver flowering 2	0.825
	CRR073314	Silver flowering 3	1.478
	CRR073315	Gold flowering 1	3.847
	CRR073316	Gold flowering 2	4.025
	CRR073317	Gold flowering 3	2.195
	CRR073318	Tawny withering 1	5.440
	CRR073319	Tawny withering 2	9.419
	CRR073320	Tawny withering 3	8.810