Gene detail

Detail information of GWHGAAZE009883

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_010652177.1	PREDICTED: DNA mismatch repair protein PMS1 isoform X2 [Vitis vinifera]
Swissprot	tr\|Q941I6\|PMS1_ARATH	DNA mismatch repair protein PMS1
trEMBL	tr\|A0A067JW62\|A0A067JW62_JATCU	Uncharacterized protein {ECO:0000313\|EMBL:KDP28142.1}
TAIR10	AT4G02460.1	DNA mismatch repair protein, putative

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	119169298	119178281	+
GWHAAZE00000002	mRNA	119169298	119178281	+
GWHAAZE00000002	exon	119169298	119169668	+
GWHAAZE00000002	exon	119170248	119170571	+
GWHAAZE00000002	exon	119172600	119173796	+
GWHAAZE00000002	exon	119174013	119174281	+
GWHAAZE00000002	exon	119174368	119174500	+
GWHAAZE00000002	exon	119175703	119175776	+
GWHAAZE00000002	exon	119176695	119176760	+
GWHAAZE00000002	exon	119177136	119177239	+
GWHAAZE00000002	exon	119177849	119178030	+
GWHAAZE00000002	exon	119178153	119178281	+
GWHAAZE00000002	five_prime_UTR	119169298	119169428	+
GWHAAZE00000002	CDS	119169429	119169668	+
GWHAAZE00000002	CDS	119170248	119170571	+
GWHAAZE00000002	CDS	119172600	119173796	+
GWHAAZE00000002	CDS	119174013	119174281	+
GWHAAZE00000002	CDS	119174368	119174500	+
GWHAAZE00000002	CDS	119175703	119175776	+
GWHAAZE00000002	CDS	119176695	119176760	+
GWHAAZE00000002	CDS	119177136	119177239	+
GWHAAZE00000002	CDS	119177849	119178030	+
GWHAAZE00000002	CDS	119178153	119178281	+

Transcript Sequence
>GWHTAAZE009895 GTTTGATTTCCCTTGGATAATATATATATATACCTAATTCGTGTGCGTGTGCACTAGATTTCTACTTAATCATTCTCGCTTAACTCATATAGTAGTTTAATATTATGCGAGTATAATTCGATCGAGCTTCAATGGAAACGGGAGTAACTTCATCAGCTGATTCCCAAACCATTAGGCCTATAAACAAGGGAGTCGTTCACAGAATTTGTGCGGGACAAGTGATATTAGACCTTTCTTCAGCGGTGAAAGAGTTGGTTGAGAACAGCTTGGATGCTGGCGCCACCAGCATCGAGATCGCCTTGAAAGAATACGGCCAAGAATGGTTCCAGGTCATTGATAATGGCTGTGGCATTTCTCCTAACAATTTCAAGGTCCTTGCACTTAAGCATCATACTTCCAAATTGGCAGATTTTCCTGATCTTCAATCATTAACTACTTTTGGCTTCAGAGGGGAGGCTCTCAGTTCCCTTTGTACTTTGGGGGATTTGACTGTGGAAACCAGGACGAAAAATGAACAGGTGGCAACACACTTGACCTTTGATCGTTCAGGTCTGCTAACAGCTGAAAGTAAGATAGCACGGCAAATTGGTACCACTGTCATTGTTAAGAAGTTGTTCTCCAATTTGCCAGTTCGGAGCAAAGAATTTCAACGCAACATCCGCAAGGAATATGGCAAGCTTATTTCTTTATTGAATGCATATGCTCTTGTTGCAAACGGAGTCAGAATAGTTTGCACCAACACAACTGGAAAAAATGTAAAATCCACGGTGCTTAAGACACAGGGAAGAGGTTCCCTCAAAGATAACATCATAACAGTGTTTGGCATGAGCACCTTCAACTGCTTGGAGCCTGTGAGCATGTGTATATCTGATAGTTGCAAAGTTGATGGTTTTCTTTCCAAGTCCGGATATGGTAGTGGGCGGAATTTAGGGGATCGACAATACTTTTTTGTAAATGGTCGACCAGTTGATATGCCTAAAGTCAGCAAGCTTGTGAATGAGTTATACAAAGGCGCAAACTCAAGACAGTACCCAATTGCAATAATGAACTTTACTCTTCCAACTAAGGCTTGCGATGTCAATGTAACACCAGATAAAAGAAAAATATTCTTTTCTGATGAAGGCTCCATTCTGCACTCCTTAAGAGAAGCTTTAGAAAGGATCTACTCCCCAACTCATGCAAGCTATTCTATTAATAGATGTGAGGAGCTTGGTAAGGATGACAATGGCACCAAGATGGATTCTCATCATGAAAGATCACAAATTTCATCAAAACAGCTCCCTTCGGATGACAGTGATCCTAAAGGAGACCAATGTGGAGATGGTGGCATTCTTCTCCCAAACACCGAAGAAGGCATAAGGGGCTCACCTGTTGTAGAGAGGATCAACAATGATGATGATAGTTCAACAGGAAAAGATATCATAAAGCGTTTTAGTATTGGTAAGAATGTTGAAAGCTTTTCTGGGAGTCACAGCAGGCAATTGATAAATCATTTTTGTAGTGGTACAACCGATCATCATGCTTCACTTTATTCGAGAGCAATAGAGAATGATGCCATTGGCAACAAGGATTCACCCAATCGTTCAAGTATGGTGCAGTCATCACTTGCAAAATTTGTTACAGTTAATAAGAGAAAACTAGAAAATATCAGCACAACCTTGTCTGAAGTCCCTCTCCTTAGGAATGGACCTGTTCAATGCCAGTTAAGGAAAACCAATTCTGAATCTACCCCATTTCCAAGATTTCCAATCAACTGTCAAAATGTTGATGATACTGAAGAAGAAAAGATTTATCCCGAGCCTTCCACGTATTTTGGTGGGGAGAAAGTTATAAGTAATGTAGATGTTCCACTTTCTTCTGGAAGCAGCATGAGACATGAAGAAGATGAGGAGGACCTGAATATTCAAGAGAAGCCAGTGCCTGTTGATGATTCACTGTTCAATGCTTCATCTACCAAAAGTTTCAACAATACCTCGGAAGATCTATTAGATACGTCTCATGCATTACAAACTTCTTCAGCTTCCGATACTTTAATGCCTTCTTCTGGTTTAAAGATTGGTTCTACCTTGCAATTTAGTTTTGAAGACTTGAAGACAAGGAGGCAACAGAGGCTGTCAAGATTGCAATCCAGCAAACATACATATGGAGTGAAGATAAAAGGTGGTAGGTGCTATGCTGCTGCAACACTAGAGCTTTCTCAACTGGTAAACGAGGAAGGGAAGGAAAAAGCTTTAGCTGCAGCTACTAATGAATTGGAAAGGCTATTCAAGAAGGAGTACTTTGGCCAGATGAAGCATGCTGCAGATGAGAAATACAATTTTGAGCGTTTGTCACAGCTGACCATCTTGAACCAACAGCCATTACTCAGGCCATTGAGGATGGAGTTATCTCCTGAAGAAGAAATAGTCGTTTCAATGCACCTGGACACTATCAGGAAAAATGGGTTCGTTTTGGAAGAGGATGTGGATTCTCCACCTGGGCAGCGTTATATGCTAAAAGCCGTCCCCTTCAGTAAAAACGTAACTTTTGGAGTTGCAGATGTGAAGGACCTTATATCTATTCTTGCGGATAGCCAAGGAGAATGCAGGATGATGGGCAGTTACAAAATGGACACTCCGGATTCAGTTTGCCCACCAAGAGTTCGTGGAATGCTGGCCTCACGTGCTTGTAGATCTTCTGTTATGATTGGAGATGCACTTGGAAGAAATGAGATGCAAAAGATCCTTGATCATTTGGTGGGCCTCAAGTCTCCTTGGAACTGTCCGCATGGGAGGCCAACAATGCGTCACTTAGTCGACTTATCAGCAATCCGTAAAAAGTTTGAGGTAGATGATATAGATATTTTATAG

Network for GWHGAAZE009883

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF13589.7	HATPase_c_3	35	137	9.60E-15
PF01119.20	DNA_mis_repair	227	345	1.10E-26
PF08676.12	MutL_C	722	856	1.80E-22

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K10858	PMS2	Mismatch repair	map03430
K10858	PMS2	Fanconi anemia pathway	map03460

Gene Ontology

GO term	Ontology	Name
GO:0006298	biological_process	mismatch repair
GO:0005524	molecular_function	ATP binding
GO:0030983	molecular_function	mismatched DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	10.381
	SRR3591706	second leaf	5.203
	SRR3591707	mature leaf	7.509
	SRR3591708	Shoot apex	14.582
	SRR3591709	Stem	11.069
	SRR3591710	White floral bud	8.290
	SRR3591711	White flower	9.595
	SRR3591712	Green floral bud	8.710
	SRR3591713	Yellow flower	9.506
SRP173429	SRR8316895	Juvenile bud stage	8.221
	SRR8316896	Juvenile bud stage	11.033
	SRR8316897	Juvenile bud stage	4.801
	SRR8316894	Third green stage	4.518
	SRR8316900	Third green stage	10.103
	SRR8316901	Third green stage	10.489
	SRR8316898	Complete white stage	2.879
	SRR8316899	Complete white stage	13.108
	SRR8316903	Complete white stage	6.113
	SRR8316902	Silver flowering stage	3.888
	SRR8316904	Silver flowering stage	6.116
	SRR8316905	Silver flowering stage	3.063
	SRR8316906	Gold flowering stage	8.189
	SRR8316907	Gold flowering stage	7.182
	SRR8316908	Gold flowering stage	7.103
SRP132670	SRR6706286	Control	5.473
	SRR6706287	Light intensity 50%	6.545
	SRR6706288	Light intensity 20%	7.132
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.526
	CNS0095593	Slightly white alabastrum(diploid) 2	5.677
	CNS0095594	Slightly white alabastrum(diploid) 3	7.794
	CNS0095595	Whole white alabastrum(diploid) 2	7.076
	CNS0095596	Whole white alabastrum(diploid) 3	7.227
	CNS0095597	Whole white alabastrum(diploid) 4	7.266
	CNS0095598	Silvery flower (diploied) 1	8.034
	CNS0095599	Silvery flower (diploied) 2	7.130
	CNS0095600	Silvery flower (diploied) 3	8.445
	CNS0095601	Golden flower (diploid) 1	8.317
	CNS0095602	Golden flower (diploid) 2	9.518
	CNS0095603	Golden flower (diploid) 3	8.876
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.228
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.122
	CNS0095606	Slightly white alabastrum(tetraploid) 3	11.666
	CNS0095607	Whole white alabastrum(tetraploid) 1	7.243
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.737
	CNS0095609	Whole white alabastrum(tetraploid) 3	8.303
	CNS0095610	Silvery flower (tetraploid) 1	10.950
	CNS0095611	Silvery flower (tetraploid) 2	10.681
	CNS0095612	Silvery flower (tetraploid) 3	9.512
	CNS0095613	Golden flower (tetraploid) 1	4.897
	CNS0095614	Golden flower (tetraploid) 2	8.602
	CNS0095615	Golden flower (tetraploid) 3	6.503
CRA001975	CRR073297	Stem 1	8.661
	CRR073298	Stem 2	8.453
	CRR073299	Stem 3	6.758
	CRR073300	Leaf 1	9.228
	CRR073301	Leaf 2	8.227
	CRR073302	Leaf 3	6.711
	CRR073303	Juvenile bud 1	6.558
	CRR073304	Juvenile bud 2	3.985
	CRR073305	Juvenile bud 3	6.541
	CRR073306	Third green 1	1.291
	CRR073307	Third green 2	1.857
	CRR073308	Third green 3	1.803
	CRR073309	Second white 1	1.407
	CRR073310	Second white 2	2.470
	CRR073311	Second white 3	1.888
	CRR073312	Silver flowering 1	1.572
	CRR073313	Silver flowering 2	2.007
	CRR073314	Silver flowering 3	1.470
	CRR073315	Gold flowering 1	3.454
	CRR073316	Gold flowering 2	4.952
	CRR073317	Gold flowering 3	2.541
	CRR073318	Tawny withering 1	5.082
	CRR073319	Tawny withering 2	6.471
	CRR073320	Tawny withering 3	5.648