Detail information of GWHGAAZE009888


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002265436.11.1596E-145PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Vitis vinifera]
Swissprottr|B8B5U8|BAHL2_ORYSI6E-126Probable E3 ubiquitin-protein ligase BAH1-like 1
trEMBLtr|D7U277|D7U277_VITVI4E-146Putative uncharacterized protein {ECO:0000313|EMBL:CBI36843.3}
TAIR10AT1G02860.13E-77SPX (SYG1/Pho81/XPR1) domain-containing protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene119265765119268489-
GWHAAZE00000002mRNA119265765119268489-
GWHAAZE00000002exon119265765119265930-
GWHAAZE00000002exon119266005119266063-
GWHAAZE00000002exon119266667119266804-
GWHAAZE00000002exon119267927119268181-
GWHAAZE00000002exon119268283119268489-
GWHAAZE00000002CDS119268283119268489-
GWHAAZE00000002CDS119267927119268181-
GWHAAZE00000002CDS119266667119266804-
GWHAAZE00000002CDS119266005119266063-
GWHAAZE00000002CDS119265765119265930-
Transcript Sequence

Network for GWHGAAZE009888

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF13920.7zf-C3HC4_31482019.20E-07
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyRING
Ubiquitin FamilyU-box

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf4.414
SRR3591706second leaf1.378
SRR3591707mature leaf1.868
SRR3591708Shoot apex4.338
SRR3591709Stem9.218
SRR3591710White floral bud8.937
SRR3591711White flower6.843
SRR3591712Green floral bud17.009
SRR3591713Yellow flower4.604
SRP173429 SRR8316895Juvenile bud stage 6.675
SRR8316896Juvenile bud stage 24.173
SRR8316897Juvenile bud stage 7.072
SRR8316894Third green stage 8.562
SRR8316900Third green stage 11.343
SRR8316901Third green stage 12.286
SRR8316898Complete white stage 0.962
SRR8316899Complete white stage 4.442
SRR8316903Complete white stage 2.043
SRR8316902Silver flowering stage2.418
SRR8316904Silver flowering stage2.156
SRR8316905Silver flowering stage0.969
SRR8316906Gold flowering stage 3.135
SRR8316907Gold flowering stage 3.865
SRR8316908Gold flowering stage 1.877
SRP132670SRR6706286Control6.380
SRR6706287Light intensity 50%7.206
SRR6706288Light intensity 20%5.635
CNP0000432CNS0095592Slightly white alabastrum(diploid) 118.003
CNS0095593Slightly white alabastrum(diploid) 211.738
CNS0095594Slightly white alabastrum(diploid) 327.065
CNS0095595Whole white alabastrum(diploid) 219.092
CNS0095596Whole white alabastrum(diploid) 319.958
CNS0095597Whole white alabastrum(diploid) 416.701
CNS0095598Silvery flower (diploied) 15.215
CNS0095599Silvery flower (diploied) 23.011
CNS0095600Silvery flower (diploied) 33.154
CNS0095601Golden flower (diploid) 18.511
CNS0095602Golden flower (diploid) 26.295
CNS0095603Golden flower (diploid) 35.202
CNS0095604Slightly white alabastrum(tetraploid) 125.453
CNS0095605Slightly white alabastrum(tetraploid) 225.202
CNS0095606Slightly white alabastrum(tetraploid) 36.235
CNS0095607Whole white alabastrum(tetraploid) 130.985
CNS0095608Whole white alabastrum(tetraploid) 229.113
CNS0095609Whole white alabastrum(tetraploid) 315.886
CNS0095610Silvery flower (tetraploid) 12.662
CNS0095611Silvery flower (tetraploid) 22.655
CNS0095612Silvery flower (tetraploid) 32.573
CNS0095613Golden flower (tetraploid) 11.438
CNS0095614Golden flower (tetraploid) 22.201
CNS0095615Golden flower (tetraploid) 31.592
CRA001975CRR073297Stem 18.160
CRR073298Stem 213.361
CRR073299Stem 38.500
CRR073300Leaf 110.789
CRR073301Leaf 210.500
CRR073302Leaf 35.887
CRR073303Juvenile bud 17.967
CRR073304Juvenile bud 25.468
CRR073305Juvenile bud 32.551
CRR073306Third green 10.412
CRR073307Third green 20.838
CRR073308Third green 31.994
CRR073309Second white 11.604
CRR073310Second white 21.205
CRR073311Second white 32.910
CRR073312Silver flowering 11.686
CRR073313Silver flowering 24.731
CRR073314Silver flowering 34.184
CRR073315Gold flowering 12.698
CRR073316Gold flowering 23.526
CRR073317Gold flowering 31.813
CRR073318Tawny withering 15.576
CRR073319Tawny withering 26.118
CRR073320Tawny withering 36.586