Gene detail

Detail information of GWHGAAZE009894

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CDP17136.1	9.8375E-175	unnamed protein product [Coffea canephora]
Swissprot	tr\|Q8LEA8\|EID1_ARATH	1E-143	Phytochrome A-associated F-box protein
trEMBL	tr\|A0A068V911\|A0A068V911_COFCA	4E-175	Coffea canephora DH200=94 genomic scaffold, scaffold_144 {ECO:0000313\|EMBL:CDP17136.1}
TAIR10	AT4G02440.1	3E-105	F-box family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	119371860	119372849	-
GWHAAZE00000002	mRNA	119371860	119372849	-
GWHAAZE00000002	exon	119371860	119372849	-
GWHAAZE00000002	CDS	119371860	119372849	-

Transcript Sequence
>GWHTAAZE009906 ATGTCTGGAAGTGTGTTCTCAAAACTTTCCGAAGACGTAGTTCTCAAAATATTCTTCAAGCTGGAAGACGATCCTCGAAACTGGGCTCGACTCGCTTGCGTTTCCACCAAATTCTCCTCTCTAATCCGCACCATCTGTTGGAAAACCAAATGCTCTCAAGCCATTCCCTCCGTCGTCTCCGATCTCCTCTCCCCCTCCCCCTCCCCCTCCTCCGACTCCGACTGGTCCTCCCTCTATAAGATCTCCGTCTGCTGCCCCGGCCTCCTCCACGCCGGTGTCCTCTTAGAAAACTCCGATTTCGGCCTCGAACGCGAGCTGGGTCCCGACCACAATTATCATCAAGACACTACTATTCATTCACAAACTACTACGCCTTCTTCGAGCCACAACCAAACTACTACTGCTGATTCGGATGTGGTGGTTTCTGGGTCCGATTGTGCTTGGTCTTTATTCGATGATCTTTACTTTGACACTGTTTATAATGCTTCTGAATTTCAAGATGTAACTGAAGTTGTTGAAGATGATGATAAAGAGGGCGGTGTGGTGAATACATCTTGTGATTCTGCTCTTTGTAAGAGAAGGAAAGTTTGTAGATCTCTTAGATCTCATTTGGCATCTGGGGTTTGGAATTTGAACCGCGAGCAAGGTAATAAGTTGCTGGCGAGTCGATTTAGAGGGGATTGTTTGTACATCTGTGACTGGCCTGGTTGTGTTCACATGGAGGAGAAGAGGAATTATATGCTTTTTAGGGGGATTTTCAAGAATTTCAAGAAGTCTAGGGTTTGGAGAACTATTAACGATGGGGATAGGAGTAAGATTGATCTGCATTGCGCTTATTGCCCTTGTAAGCAGACATGGGATCTTCATTCAGCCTTCTGTTTGAGGAGGGTTTTTGGGTATCATGATGATGGGGAGCCGGTTGTTCGAGCTTATGTATGTGAGAATGGCCATGTTTCTGGGGCTTGGACTGACTGGCCTTTGTACACTTAA

Network for GWHGAAZE009894

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--

Protein Sequence

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	41.559
	SRR3591706	second leaf	22.623
	SRR3591707	mature leaf	18.502
	SRR3591708	Shoot apex	32.691
	SRR3591709	Stem	40.518
	SRR3591710	White floral bud	27.981
	SRR3591711	White flower	32.981
	SRR3591712	Green floral bud	18.570
	SRR3591713	Yellow flower	28.074
SRP173429	SRR8316895	Juvenile bud stage	15.786
	SRR8316896	Juvenile bud stage	19.259
	SRR8316897	Juvenile bud stage	7.564
	SRR8316894	Third green stage	9.446
	SRR8316900	Third green stage	25.667
	SRR8316901	Third green stage	21.490
	SRR8316898	Complete white stage	13.750
	SRR8316899	Complete white stage	35.269
	SRR8316903	Complete white stage	21.925
	SRR8316902	Silver flowering stage	13.377
	SRR8316904	Silver flowering stage	22.490
	SRR8316905	Silver flowering stage	12.861
	SRR8316906	Gold flowering stage	29.355
	SRR8316907	Gold flowering stage	31.388
	SRR8316908	Gold flowering stage	24.543
SRP132670	SRR6706286	Control	30.299
	SRR6706287	Light intensity 50%	26.922
	SRR6706288	Light intensity 20%	28.702
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	14.342
	CNS0095593	Slightly white alabastrum(diploid) 2	18.458
	CNS0095594	Slightly white alabastrum(diploid) 3	16.146
	CNS0095595	Whole white alabastrum(diploid) 2	16.756
	CNS0095596	Whole white alabastrum(diploid) 3	9.761
	CNS0095597	Whole white alabastrum(diploid) 4	11.692
	CNS0095598	Silvery flower (diploied) 1	29.976
	CNS0095599	Silvery flower (diploied) 2	21.660
	CNS0095600	Silvery flower (diploied) 3	42.452
	CNS0095601	Golden flower (diploid) 1	26.188
	CNS0095602	Golden flower (diploid) 2	43.467
	CNS0095603	Golden flower (diploid) 3	41.713
	CNS0095604	Slightly white alabastrum(tetraploid) 1	18.862
	CNS0095605	Slightly white alabastrum(tetraploid) 2	14.570
	CNS0095606	Slightly white alabastrum(tetraploid) 3	37.244
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.171
	CNS0095608	Whole white alabastrum(tetraploid) 2	8.193
	CNS0095609	Whole white alabastrum(tetraploid) 3	20.322
	CNS0095610	Silvery flower (tetraploid) 1	37.323
	CNS0095611	Silvery flower (tetraploid) 2	37.148
	CNS0095612	Silvery flower (tetraploid) 3	44.917
	CNS0095613	Golden flower (tetraploid) 1	24.626
	CNS0095614	Golden flower (tetraploid) 2	28.385
	CNS0095615	Golden flower (tetraploid) 3	31.400
CRA001975	CRR073297	Stem 1	30.994
	CRR073298	Stem 2	31.598
	CRR073299	Stem 3	36.410
	CRR073300	Leaf 1	31.497
	CRR073301	Leaf 2	36.052
	CRR073302	Leaf 3	23.618
	CRR073303	Juvenile bud 1	26.986
	CRR073304	Juvenile bud 2	26.708
	CRR073305	Juvenile bud 3	39.641
	CRR073306	Third green 1	37.947
	CRR073307	Third green 2	32.838
	CRR073308	Third green 3	34.303
	CRR073309	Second white 1	44.817
	CRR073310	Second white 2	31.185
	CRR073311	Second white 3	41.325
	CRR073312	Silver flowering 1	39.131
	CRR073313	Silver flowering 2	37.473
	CRR073314	Silver flowering 3	27.840
	CRR073315	Gold flowering 1	20.082
	CRR073316	Gold flowering 2	36.667
	CRR073317	Gold flowering 3	29.235
	CRR073318	Tawny withering 1	39.301
	CRR073319	Tawny withering 2	21.057
	CRR073320	Tawny withering 3	36.831