Detail information of GWHGAAZE009900


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002321005.10UDP-XYLOSE SYNTHASE 4 family protein [Populus trichocarpa]
Swissprottr|Q8S8T4|UXS4_ARATH0UDP-glucuronic acid decarboxylase 4
trEMBLtr|A9PD45|A9PD45_POPTR0UDP-XYLOSE SYNTHASE 4 family protein {ECO:0000313|EMBL:EEE99320.1}
TAIR10AT2G47650.10UDP-xylose synthase 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene119467387119470772+
GWHAAZE00000002mRNA119467387119470772+
GWHAAZE00000002exon119467387119467893+
GWHAAZE00000002exon119468000119468144+
GWHAAZE00000002exon119468542119468621+
GWHAAZE00000002exon119468745119468828+
GWHAAZE00000002exon119468946119469020+
GWHAAZE00000002exon119469960119470052+
GWHAAZE00000002exon119470521119470772+
GWHAAZE00000002CDS119467387119467893+
GWHAAZE00000002CDS119468000119468144+
GWHAAZE00000002CDS119468542119468621+
GWHAAZE00000002CDS119468745119468828+
GWHAAZE00000002CDS119468946119469020+
GWHAAZE00000002CDS119469960119470052+
GWHAAZE00000002CDS119470521119470772+
Transcript Sequence

Network for GWHGAAZE009900

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF16363.6GDP_Man_Dehyd903775.90E-57
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K08678UXS1, uxs Metabolic pathways map01100
Amino sugar and nucleotide sugar metabolismmap00520

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf315.718
SRR3591706second leaf160.242
SRR3591707mature leaf42.738
SRR3591708Shoot apex201.733
SRR3591709Stem166.108
SRR3591710White floral bud358.004
SRR3591711White flower237.116
SRR3591712Green floral bud288.275
SRR3591713Yellow flower119.136
SRP173429 SRR8316895Juvenile bud stage 242.536
SRR8316896Juvenile bud stage 360.514
SRR8316897Juvenile bud stage 172.059
SRR8316894Third green stage 86.134
SRR8316900Third green stage 273.127
SRR8316901Third green stage 311.792
SRR8316898Complete white stage 91.542
SRR8316899Complete white stage 274.324
SRR8316903Complete white stage 141.297
SRR8316902Silver flowering stage100.145
SRR8316904Silver flowering stage121.035
SRR8316905Silver flowering stage38.919
SRR8316906Gold flowering stage 151.349
SRR8316907Gold flowering stage 189.243
SRR8316908Gold flowering stage 174.220
SRP132670SRR6706286Control207.407
SRR6706287Light intensity 50%231.782
SRR6706288Light intensity 20%232.281
CNP0000432CNS0095592Slightly white alabastrum(diploid) 1311.581
CNS0095593Slightly white alabastrum(diploid) 2329.598
CNS0095594Slightly white alabastrum(diploid) 3361.720
CNS0095595Whole white alabastrum(diploid) 2431.985
CNS0095596Whole white alabastrum(diploid) 3374.589
CNS0095597Whole white alabastrum(diploid) 4351.106
CNS0095598Silvery flower (diploied) 1258.390
CNS0095599Silvery flower (diploied) 2340.010
CNS0095600Silvery flower (diploied) 3151.556
CNS0095601Golden flower (diploid) 1227.086
CNS0095602Golden flower (diploid) 2185.482
CNS0095603Golden flower (diploid) 3180.631
CNS0095604Slightly white alabastrum(tetraploid) 1306.027
CNS0095605Slightly white alabastrum(tetraploid) 2305.670
CNS0095606Slightly white alabastrum(tetraploid) 3231.355
CNS0095607Whole white alabastrum(tetraploid) 1382.796
CNS0095608Whole white alabastrum(tetraploid) 2352.210
CNS0095609Whole white alabastrum(tetraploid) 3238.767
CNS0095610Silvery flower (tetraploid) 1128.683
CNS0095611Silvery flower (tetraploid) 286.391
CNS0095612Silvery flower (tetraploid) 3155.871
CNS0095613Golden flower (tetraploid) 145.297
CNS0095614Golden flower (tetraploid) 2145.845
CNS0095615Golden flower (tetraploid) 386.256
CRA001975CRR073297Stem 1251.147
CRR073298Stem 2246.759
CRR073299Stem 3231.732
CRR073300Leaf 1279.201
CRR073301Leaf 2302.171
CRR073302Leaf 3276.637
CRR073303Juvenile bud 1227.701
CRR073304Juvenile bud 2168.310
CRR073305Juvenile bud 3171.868
CRR073306Third green 1185.359
CRR073307Third green 2221.239
CRR073308Third green 3259.125
CRR073309Second white 1196.388
CRR073310Second white 2144.756
CRR073311Second white 3133.964
CRR073312Silver flowering 1328.462
CRR073313Silver flowering 2448.412
CRR073314Silver flowering 3464.123
CRR073315Gold flowering 166.506
CRR073316Gold flowering 282.843
CRR073317Gold flowering 381.178
CRR073318Tawny withering 1299.812
CRR073319Tawny withering 2328.660
CRR073320Tawny withering 3245.884