Gene detail

Detail information of GWHGAAZE009918

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_011010963.1	0	PREDICTED: pectinesterase-like [Populus euphratica]
Swissprot	tr\|O81301\|PME40_ARATH	0	Pectinesterase 40 (Precursor)
trEMBL	tr\|B9GSC5\|B9GSC5_POPTR	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT4G02320.1	2E-151	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	119831169	119836084	+
GWHAAZE00000002	mRNA	119831169	119836084	+
GWHAAZE00000002	exon	119831169	119831748	+
GWHAAZE00000002	exon	119835390	119836084	+
GWHAAZE00000002	CDS	119831169	119831748	+
GWHAAZE00000002	CDS	119835390	119836084	+

Transcript Sequence
>GWHTAAZE009930 ATGTCAGATCTCTCCCCAAACAAATCATCCAGTTCCAAACACCACCACCAAATACAAACTCTACTCAGTGGGGCTATGACAAACCAGTACACGTGTCTCGATGGATTTGCGTACAGTAAATCCAAAGTACGCAAATACATCCAAGACAATCTGTTCGATATATCTCATCATGTGAGTAACTCGCTCGCATTGCTGAAAAAAATCAAAGGGAATTCGAACAAAAGTGAAAGGGAGGAGTTTGAGGAATATGGAGAAGTGAAAGGGGGGTTTCCGACGTGGCTGTCAGGGAAGGAGAGGAAGCTGTTACAGGCAGCGGTGAACGAGACAAAGTACAATCTGGTGGTGGCCAAGGATGGGAGTGGGAATTTCACGACCATCGGAGAGGCAGTGGCGGCCGCACCGAACTCGAGTGCGACTAGGTTTGTGATACACATAAAAGCAGGGGTTTATTATGAGTATATTGAGGTGGAGAGGAGGAAGACAATGCTAATGTTCGTAGGGGACGGGATCGGAAAGACGCTGGTGAAGGGTAATCGGAATGTTATCGATGGTTCTACTACTTTTCGCTCTGCTACTGTTGCTGTAGTAGGAAATGGATTCATAGCCAAAGGCATCACATTCGAGAACTACGCTGGGCCAAGCAAGCACCAAGCCGTGGCCCTCAGAAGCGGCTCGGATCTCTCCGCATTCTACAAATGCAGCTTCGTCGGCTACCAAGACACTCTCTACGTCCACTCCCTTCGCCAATTCTACCGTGAGTGTGACGTTTATGGCACAGTCGACTTCATATTCGGCAATGCCGCTGTTGTTTTCCAAAACTGCAACCTATACGCCCGCAAGCCTAACGACAACCAAAGGAACATTTTCACGGCCCAAGGTAGAGAAGATCCTAATCAAAACACTGGCATTTCAATATTAAACTGCAAAGTTGCTGCAGCCGCGGATTTAATTCCTGTGCAGTCGTCATTTAGGACGTACCTTGGTCGACCGTGGAAAGCATATTCGCGGACCGTTTATCTTAGATCGAATTTAGGTGATTTAATTGATGGGGCAGGGTGGTTGGAATGGGATGGTAATTTTGCACTAAATACACTATATTATGGGGAGTATATGAACAGGGGACCGGGCTCAAACACAAGTGCTAGAGTGACATGGCCCGGCTATAGGGTCATCACTAATTCGACCGAGGCAAGTCAGTTTACTGCTGGGAATTTTATACAGGGAGGTGAGTGGCTGAATTCTACTGGTATTCCGTTCTTTTTGGGTATGAGTTGA

Network for GWHGAAZE009918

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	9	64	2.30E-08
PF01095.20	Pectinesterase	112	408	1.60E-145

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	9.228
	SRR3591706	second leaf	60.343
	SRR3591707	mature leaf	16.118
	SRR3591708	Shoot apex	34.227
	SRR3591709	Stem	5.815
	SRR3591710	White floral bud	3.765
	SRR3591711	White flower	0.694
	SRR3591712	Green floral bud	9.031
	SRR3591713	Yellow flower	0.544
SRP173429	SRR8316895	Juvenile bud stage	15.314
	SRR8316896	Juvenile bud stage	26.100
	SRR8316897	Juvenile bud stage	9.689
	SRR8316894	Third green stage	8.822
	SRR8316900	Third green stage	24.797
	SRR8316901	Third green stage	32.905
	SRR8316898	Complete white stage	0.023
	SRR8316899	Complete white stage	2.155
	SRR8316903	Complete white stage	0.396
	SRR8316902	Silver flowering stage	0.437
	SRR8316904	Silver flowering stage	0.758
	SRR8316905	Silver flowering stage	0.207
	SRR8316906	Gold flowering stage	0.206
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.042
SRP132670	SRR6706286	Control	13.271
	SRR6706287	Light intensity 50%	13.209
	SRR6706288	Light intensity 20%	14.483
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	75.239
	CNS0095593	Slightly white alabastrum(diploid) 2	58.209
	CNS0095594	Slightly white alabastrum(diploid) 3	95.029
	CNS0095595	Whole white alabastrum(diploid) 2	73.192
	CNS0095596	Whole white alabastrum(diploid) 3	84.462
	CNS0095597	Whole white alabastrum(diploid) 4	72.549
	CNS0095598	Silvery flower (diploied) 1	8.390
	CNS0095599	Silvery flower (diploied) 2	11.951
	CNS0095600	Silvery flower (diploied) 3	2.811
	CNS0095601	Golden flower (diploid) 1	6.274
	CNS0095602	Golden flower (diploid) 2	3.317
	CNS0095603	Golden flower (diploid) 3	3.894
	CNS0095604	Slightly white alabastrum(tetraploid) 1	62.127
	CNS0095605	Slightly white alabastrum(tetraploid) 2	70.255
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.720
	CNS0095607	Whole white alabastrum(tetraploid) 1	77.835
	CNS0095608	Whole white alabastrum(tetraploid) 2	60.633
	CNS0095609	Whole white alabastrum(tetraploid) 3	32.002
	CNS0095610	Silvery flower (tetraploid) 1	0.243
	CNS0095611	Silvery flower (tetraploid) 2	1.779
	CNS0095612	Silvery flower (tetraploid) 3	3.481
	CNS0095613	Golden flower (tetraploid) 1	0.618
	CNS0095614	Golden flower (tetraploid) 2	0.521
	CNS0095615	Golden flower (tetraploid) 3	2.326
CRA001975	CRR073297	Stem 1	28.858
	CRR073298	Stem 2	24.595
	CRR073299	Stem 3	35.272
	CRR073300	Leaf 1	21.757
	CRR073301	Leaf 2	23.698
	CRR073302	Leaf 3	21.866
	CRR073303	Juvenile bud 1	14.639
	CRR073304	Juvenile bud 2	9.858
	CRR073305	Juvenile bud 3	3.788
	CRR073306	Third green 1	3.761
	CRR073307	Third green 2	3.907
	CRR073308	Third green 3	3.576
	CRR073309	Second white 1	0.104
	CRR073310	Second white 2	0.935
	CRR073311	Second white 3	1.309
	CRR073312	Silver flowering 1	2.233
	CRR073313	Silver flowering 2	3.374
	CRR073314	Silver flowering 3	1.754
	CRR073315	Gold flowering 1	15.438
	CRR073316	Gold flowering 2	28.131
	CRR073317	Gold flowering 3	17.983
	CRR073318	Tawny withering 1	24.065
	CRR073319	Tawny withering 2	23.017
	CRR073320	Tawny withering 3	28.811