Detail information of GWHGAAZE009921


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_007050984.10Sucrose synthase 3 isoform 1 [Theobroma cacao]
Swissprottr|O24301|SUS2_PEA0Sucrose synthase 2
trEMBLtr|A0A061DST1|A0A061DST1_THECC0Sucrose synthase {ECO:0000256|RuleBase:RU280817}
TAIR10AT4G02280.10sucrose synthase 3

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene119865059119871462-
GWHAAZE00000002mRNA119865059119871462-
GWHAAZE00000002exon119865059119865097-
GWHAAZE00000002exon119865382119865466-
GWHAAZE00000002exon119865553119865845-
GWHAAZE00000002exon119865940119866261-
GWHAAZE00000002exon119866550119866774-
GWHAAZE00000002exon119866984119867150-
GWHAAZE00000002exon119867251119867367-
GWHAAZE00000002exon119867526119867699-
GWHAAZE00000002exon119867856119867951-
GWHAAZE00000002exon119868152119868368-
GWHAAZE00000002exon119868446119868564-
GWHAAZE00000002exon119868801119868993-
GWHAAZE00000002exon119869118119869269-
GWHAAZE00000002exon119871111119871243-
GWHAAZE00000002exon119871365119871462-
GWHAAZE00000002CDS119871365119871462-
GWHAAZE00000002CDS119871111119871243-
GWHAAZE00000002CDS119869118119869269-
GWHAAZE00000002CDS119868801119868993-
GWHAAZE00000002CDS119868446119868564-
GWHAAZE00000002CDS119868152119868368-
GWHAAZE00000002CDS119867856119867951-
GWHAAZE00000002CDS119867526119867699-
GWHAAZE00000002CDS119867251119867367-
GWHAAZE00000002CDS119866984119867150-
GWHAAZE00000002CDS119866550119866774-
GWHAAZE00000002CDS119865940119866261-
GWHAAZE00000002CDS119865553119865845-
GWHAAZE00000002CDS119865382119865466-
GWHAAZE00000002CDS119865059119865097-
Transcript Sequence

Network for GWHGAAZE009921

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00862.20Sucrose_synth85553.80E-290
PF00534.21Glycos_transf_15617349.20E-31
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K00695E2.4.1.13 Metabolic pathways map01100
Biosynthesis of secondary metabolitesmap01110
Starch and sucrose metabolismmap00500

Gene Ontology

GO term OntologyName
GO:0005985biological_processsucrose metabolic process
GO:0016157molecular_functionsucrose synthase activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf64.901
SRR3591706second leaf27.713
SRR3591707mature leaf83.306
SRR3591708Shoot apex37.497
SRR3591709Stem163.592
SRR3591710White floral bud92.486
SRR3591711White flower126.391
SRR3591712Green floral bud60.913
SRR3591713Yellow flower180.606
SRP173429 SRR8316895Juvenile bud stage 58.638
SRR8316896Juvenile bud stage 82.778
SRR8316897Juvenile bud stage 31.872
SRR8316894Third green stage 40.322
SRR8316900Third green stage 80.099
SRR8316901Third green stage 95.289
SRR8316898Complete white stage 42.463
SRR8316899Complete white stage 172.306
SRR8316903Complete white stage 86.518
SRR8316902Silver flowering stage23.925
SRR8316904Silver flowering stage38.831
SRR8316905Silver flowering stage14.512
SRR8316906Gold flowering stage 101.787
SRR8316907Gold flowering stage 98.234
SRR8316908Gold flowering stage 91.905
SRP132670SRR6706286Control153.555
SRR6706287Light intensity 50%113.480
SRR6706288Light intensity 20%106.124
CNP0000432CNS0095592Slightly white alabastrum(diploid) 186.922
CNS0095593Slightly white alabastrum(diploid) 248.727
CNS0095594Slightly white alabastrum(diploid) 354.889
CNS0095595Whole white alabastrum(diploid) 245.718
CNS0095596Whole white alabastrum(diploid) 339.186
CNS0095597Whole white alabastrum(diploid) 445.180
CNS0095598Silvery flower (diploied) 1193.817
CNS0095599Silvery flower (diploied) 2168.923
CNS0095600Silvery flower (diploied) 3252.037
CNS0095601Golden flower (diploid) 1259.605
CNS0095602Golden flower (diploid) 2571.108
CNS0095603Golden flower (diploid) 3553.853
CNS0095604Slightly white alabastrum(tetraploid) 150.142
CNS0095605Slightly white alabastrum(tetraploid) 237.482
CNS0095606Slightly white alabastrum(tetraploid) 378.829
CNS0095607Whole white alabastrum(tetraploid) 131.453
CNS0095608Whole white alabastrum(tetraploid) 232.718
CNS0095609Whole white alabastrum(tetraploid) 358.725
CNS0095610Silvery flower (tetraploid) 1153.580
CNS0095611Silvery flower (tetraploid) 2176.404
CNS0095612Silvery flower (tetraploid) 3100.808
CNS0095613Golden flower (tetraploid) 1153.172
CNS0095614Golden flower (tetraploid) 2245.087
CNS0095615Golden flower (tetraploid) 3321.408
CRA001975CRR073297Stem 189.584
CRR073298Stem 282.300
CRR073299Stem 378.647
CRR073300Leaf 177.114
CRR073301Leaf 278.305
CRR073302Leaf 356.820
CRR073303Juvenile bud 192.766
CRR073304Juvenile bud 256.366
CRR073305Juvenile bud 3158.653
CRR073306Third green 118.353
CRR073307Third green 224.481
CRR073308Third green 319.764
CRR073309Second white 182.724
CRR073310Second white 271.929
CRR073311Second white 385.047
CRR073312Silver flowering 1155.799
CRR073313Silver flowering 2175.411
CRR073314Silver flowering 3187.909
CRR073315Gold flowering 134.142
CRR073316Gold flowering 241.032
CRR073317Gold flowering 338.841
CRR073318Tawny withering 1115.602
CRR073319Tawny withering 299.949
CRR073320Tawny withering 374.203