Gene detail

Detail information of GWHGAAZE009942

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_007145164.1	3.61788E-90	hypothetical protein PHAVU_007G215800g [Phaseolus vulgaris]
Swissprot	tr\|O22264\|MYB12_ARATH	6E-75	Transcription factor MYB12
trEMBL	tr\|V7BJF5\|V7BJF5_PHAVU	1E-90	Uncharacterized protein {ECO:0000313\|EMBL:ESW17158.1}
TAIR10	AT5G49330.1	3E-64	myb domain protein 111

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	120315361	120318481	-
GWHAAZE00000002	mRNA	120315361	120318481	-
GWHAAZE00000002	exon	120318349	120318481	-
GWHAAZE00000002	exon	120316740	120316869	-
GWHAAZE00000002	exon	120315361	120316111	-
GWHAAZE00000002	CDS	120318349	120318481	-
GWHAAZE00000002	CDS	120316740	120316869	-
GWHAAZE00000002	CDS	120315361	120316111	-

Transcript Sequence
>GWHTAAZE009954 ATGGGGAGAGCACCATGCTGTGAGAAAGTGGGGTTAAAGAGGGGGAGATGGACAGCAGAAGAAGATGAGATCTTAACAAAATACATTCAAGCCAATGGTGAAGGCTCATGGAGGTCATTACCCAAGAATGCTGGGTTGCTGAGGTGTGGAAAGAGTTGTAGGCTGAGATGGATTAACTACTTGAGATCTGACTTAAAGAGAGGCAATATATCTAATGAAGAGGAAGAAGCCATAATTAAGTTACATGCATCTTTAGGGAATAAGTGGTCTTTAATTGCGGGACACCTACCAGGAAGAACAGACAACGAGATAAAAAATTATTGGAATTCTCATTTGAGTAGAAAAATTCAAAGCTTTCGAAGCCCCACTGATGAAACTAAACCACCGCTTACCATGGAAAGTAGTGTGAACAAACGGAGAGGTCGGACCAGTAGGTCCGCCATGAAGAGGAACAAAATGTACATTTCCACTATCACTCCAAAATTTTTGGAGCAAAATAAAGAGAGGCCATTCATAAACAGCGTTATCCCAATGCCACGGACCCCGGCGCCCTTAGAGGAAGCGTCCAAGCTGAGTGCCGTGTCATGGCAAGAAGAAGCTATGGGTGGTATTATCTTGGACGACTGTCCAATGGAGAACCAGGGCGCGCCAATGTTATGCCCTAATGAAGAGCTAGATGCACAAATGTTGTGCCTTAATGATATCATGGCGGATGGGGAGGTGAACACAAGTGGGTCATTAAATTTGGTCCAAGATAGAGAAAACAGTGTAATGGTGGTGAATATGGAGGAGAGAGAGAGTGGTAATGGGTGGTACTCAGCTAGTTCTTCAACAAATTCTTTAATTGAAGATGGAAATAATATTTGGAATTGGAATTTGGATGGAAGCTTTGAAGGGAATGATGAGGAAGATAAAATGTTGTCGTGGCTGTGGGACACTAGTGATACTAATGGTGATGAAGGGGAAGGAGACAGCGAGAAGCAAAATGCAATGGTTGCATGGCTACTCTCTTAG

Network for GWHGAAZE009942

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00249.32	Myb_DNA-binding	14	61	1.20E-12
PF00249.32	Myb_DNA-binding	67	112	1.60E-13

Protein Sequence

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0003677	molecular_function	DNA binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	3.631
	SRR3591706	second leaf	3.521
	SRR3591707	mature leaf	5.385
	SRR3591708	Shoot apex	14.349
	SRR3591709	Stem	1.198
	SRR3591710	White floral bud	3.648
	SRR3591711	White flower	2.287
	SRR3591712	Green floral bud	8.230
	SRR3591713	Yellow flower	0.244
SRP173429	SRR8316895	Juvenile bud stage	6.791
	SRR8316896	Juvenile bud stage	8.065
	SRR8316897	Juvenile bud stage	4.040
	SRR8316894	Third green stage	3.386
	SRR8316900	Third green stage	15.185
	SRR8316901	Third green stage	19.048
	SRR8316898	Complete white stage	1.256
	SRR8316899	Complete white stage	8.962
	SRR8316903	Complete white stage	2.542
	SRR8316902	Silver flowering stage	0.932
	SRR8316904	Silver flowering stage	0.917
	SRR8316905	Silver flowering stage	0.485
	SRR8316906	Gold flowering stage	0.627
	SRR8316907	Gold flowering stage	1.237
	SRR8316908	Gold flowering stage	0.745
SRP132670	SRR6706286	Control	12.894
	SRR6706287	Light intensity 50%	9.015
	SRR6706288	Light intensity 20%	7.760
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	28.631
	CNS0095593	Slightly white alabastrum(diploid) 2	24.870
	CNS0095594	Slightly white alabastrum(diploid) 3	22.497
	CNS0095595	Whole white alabastrum(diploid) 2	28.468
	CNS0095596	Whole white alabastrum(diploid) 3	21.542
	CNS0095597	Whole white alabastrum(diploid) 4	25.668
	CNS0095598	Silvery flower (diploied) 1	10.391
	CNS0095599	Silvery flower (diploied) 2	11.131
	CNS0095600	Silvery flower (diploied) 3	5.351
	CNS0095601	Golden flower (diploid) 1	3.798
	CNS0095602	Golden flower (diploid) 2	2.286
	CNS0095603	Golden flower (diploid) 3	2.941
	CNS0095604	Slightly white alabastrum(tetraploid) 1	43.907
	CNS0095605	Slightly white alabastrum(tetraploid) 2	37.154
	CNS0095606	Slightly white alabastrum(tetraploid) 3	47.105
	CNS0095607	Whole white alabastrum(tetraploid) 1	43.433
	CNS0095608	Whole white alabastrum(tetraploid) 2	44.870
	CNS0095609	Whole white alabastrum(tetraploid) 3	23.635
	CNS0095610	Silvery flower (tetraploid) 1	11.431
	CNS0095611	Silvery flower (tetraploid) 2	3.653
	CNS0095612	Silvery flower (tetraploid) 3	5.125
	CNS0095613	Golden flower (tetraploid) 1	3.559
	CNS0095614	Golden flower (tetraploid) 2	7.373
	CNS0095615	Golden flower (tetraploid) 3	1.388
CRA001975	CRR073297	Stem 1	15.420
	CRR073298	Stem 2	14.724
	CRR073299	Stem 3	3.537
	CRR073300	Leaf 1	10.121
	CRR073301	Leaf 2	14.979
	CRR073302	Leaf 3	3.973
	CRR073303	Juvenile bud 1	6.799
	CRR073304	Juvenile bud 2	1.970
	CRR073305	Juvenile bud 3	5.436
	CRR073306	Third green 1	2.481
	CRR073307	Third green 2	1.565
	CRR073308	Third green 3	1.592
	CRR073309	Second white 1	0.380
	CRR073310	Second white 2	1.626
	CRR073311	Second white 3	0.540
	CRR073312	Silver flowering 1	0.136
	CRR073313	Silver flowering 2	0.322
	CRR073314	Silver flowering 3	0.056
	CRR073315	Gold flowering 1	13.898
	CRR073316	Gold flowering 2	7.856
	CRR073317	Gold flowering 3	3.897
	CRR073318	Tawny withering 1	0.704
	CRR073319	Tawny withering 2	0.981
	CRR073320	Tawny withering 3	1.111