Detail information of GWHGAAZE009950


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_010652238.10PREDICTED: bromodomain and WD repeat-containing protein 3 [Vitis vinifera]
Swissprottr|Q9FLX9|NLE1_ARATH3E-18Notchless protein homolog
trEMBLtr|F6H734|F6H734_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB47981.1}
TAIR10AT2G47410.10WD40/YVTN repeat-like-containing domain;Bromodomain

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene120480361120505626-
GWHAAZE00000002mRNA120480361120505626-
GWHAAZE00000002exon120505271120505626-
GWHAAZE00000002exon120502522120502673-
GWHAAZE00000002exon120501723120501962-
GWHAAZE00000002exon120501031120501140-
GWHAAZE00000002exon120500849120500926-
GWHAAZE00000002exon120500560120500666-
GWHAAZE00000002exon120494879120494973-
GWHAAZE00000002exon120494665120494798-
GWHAAZE00000002exon120492875120492978-
GWHAAZE00000002exon120492719120492796-
GWHAAZE00000002exon120491519120491597-
GWHAAZE00000002exon120491120120491288-
GWHAAZE00000002exon120489744120489814-
GWHAAZE00000002exon120485117120485197-
GWHAAZE00000002exon120484962120485032-
GWHAAZE00000002exon120484653120484749-
GWHAAZE00000002exon120484500120484559-
GWHAAZE00000002exon120484309120484363-
GWHAAZE00000002exon120483775120484157-
GWHAAZE00000002exon120481874120483694-
GWHAAZE00000002exon120481211120481780-
GWHAAZE00000002exon120481054120481112-
GWHAAZE00000002exon120480361120480556-
GWHAAZE00000002CDS120505271120505626-
GWHAAZE00000002CDS120502522120502673-
GWHAAZE00000002CDS120501723120501962-
GWHAAZE00000002CDS120501031120501140-
GWHAAZE00000002CDS120500849120500926-
GWHAAZE00000002CDS120500560120500666-
GWHAAZE00000002CDS120494879120494973-
GWHAAZE00000002CDS120494665120494798-
GWHAAZE00000002CDS120492875120492978-
GWHAAZE00000002CDS120492719120492796-
GWHAAZE00000002CDS120491519120491597-
GWHAAZE00000002CDS120491120120491288-
GWHAAZE00000002CDS120489744120489814-
GWHAAZE00000002CDS120485117120485197-
GWHAAZE00000002CDS120484962120485032-
GWHAAZE00000002CDS120484653120484749-
GWHAAZE00000002CDS120484500120484559-
GWHAAZE00000002CDS120484309120484363-
GWHAAZE00000002CDS120483775120484157-
GWHAAZE00000002CDS120481874120483694-
GWHAAZE00000002CDS120481211120481780-
GWHAAZE00000002CDS120481054120481112-
GWHAAZE00000002CDS120480361120480556-
Transcript Sequence

Network for GWHGAAZE009950

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402352725.20E-07
PF00400.33WD402783138.40E-07
PF00400.33WD403203596.40E-07
PF00400.33WD403994270.2
PF00400.33WD405796180.077
PF00439.26Bromodomain165117026.80E-06
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf15.808
SRR3591706second leaf14.883
SRR3591707mature leaf19.137
SRR3591708Shoot apex14.037
SRR3591709Stem18.613
SRR3591710White floral bud18.246
SRR3591711White flower20.901
SRR3591712Green floral bud13.113
SRR3591713Yellow flower17.678
SRP173429 SRR8316895Juvenile bud stage 7.673
SRR8316896Juvenile bud stage 10.869
SRR8316897Juvenile bud stage 5.606
SRR8316894Third green stage 4.895
SRR8316900Third green stage 10.392
SRR8316901Third green stage 10.851
SRR8316898Complete white stage 3.453
SRR8316899Complete white stage 11.519
SRR8316903Complete white stage 11.700
SRR8316902Silver flowering stage5.874
SRR8316904Silver flowering stage11.088
SRR8316905Silver flowering stage4.501
SRR8316906Gold flowering stage 15.783
SRR8316907Gold flowering stage 14.304
SRR8316908Gold flowering stage 18.306
SRP132670SRR6706286Control6.833
SRR6706287Light intensity 50%7.301
SRR6706288Light intensity 20%7.271
CNP0000432CNS0095592Slightly white alabastrum(diploid) 15.968
CNS0095593Slightly white alabastrum(diploid) 26.376
CNS0095594Slightly white alabastrum(diploid) 34.589
CNS0095595Whole white alabastrum(diploid) 26.505
CNS0095596Whole white alabastrum(diploid) 35.537
CNS0095597Whole white alabastrum(diploid) 46.551
CNS0095598Silvery flower (diploied) 19.905
CNS0095599Silvery flower (diploied) 27.884
CNS0095600Silvery flower (diploied) 315.712
CNS0095601Golden flower (diploid) 18.908
CNS0095602Golden flower (diploid) 215.103
CNS0095603Golden flower (diploid) 314.834
CNS0095604Slightly white alabastrum(tetraploid) 16.936
CNS0095605Slightly white alabastrum(tetraploid) 26.764
CNS0095606Slightly white alabastrum(tetraploid) 311.651
CNS0095607Whole white alabastrum(tetraploid) 16.905
CNS0095608Whole white alabastrum(tetraploid) 25.080
CNS0095609Whole white alabastrum(tetraploid) 39.184
CNS0095610Silvery flower (tetraploid) 115.212
CNS0095611Silvery flower (tetraploid) 212.223
CNS0095612Silvery flower (tetraploid) 314.332
CNS0095613Golden flower (tetraploid) 19.054
CNS0095614Golden flower (tetraploid) 211.561
CNS0095615Golden flower (tetraploid) 315.179
CRA001975CRR073297Stem 19.438
CRR073298Stem 28.869
CRR073299Stem 34.698
CRR073300Leaf 110.332
CRR073301Leaf 27.621
CRR073302Leaf 33.523
CRR073303Juvenile bud 13.839
CRR073304Juvenile bud 23.195
CRR073305Juvenile bud 34.981
CRR073306Third green 13.448
CRR073307Third green 22.025
CRR073308Third green 34.172
CRR073309Second white 12.086
CRR073310Second white 25.216
CRR073311Second white 36.009
CRR073312Silver flowering 14.251
CRR073313Silver flowering 23.488
CRR073314Silver flowering 33.344
CRR073315Gold flowering 11.780
CRR073316Gold flowering 25.915
CRR073317Gold flowering 31.489
CRR073318Tawny withering 14.550
CRR073319Tawny withering 25.799
CRR073320Tawny withering 34.671