Gene detail

Detail information of GWHGAAZE009957

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009338978.1	2.214E-80	PREDICTED: uncharacterized protein LOC103931269 [Pyrus x bretschneideri]
Swissprot	tr\|P10978\|POLX_TOBAC	1E-10	Endonuclease
trEMBL	tr\|M5WBY8\|M5WBY8_PRUPE	1E-41	Uncharacterized protein {ECO:0000313\|EMBL:EMJ04285.1} (Fragment)
TAIR10	AT5G48050.1	3E-10	Without detailed annotation

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	120672909	120675299	+
GWHAAZE00000002	mRNA	120672909	120675299	+
GWHAAZE00000002	exon	120672909	120673903	+
GWHAAZE00000002	exon	120674214	120674322	+
GWHAAZE00000002	exon	120675171	120675299	+
GWHAAZE00000002	CDS	120672909	120673903	+
GWHAAZE00000002	CDS	120674214	120674322	+
GWHAAZE00000002	CDS	120675171	120675299	+

Transcript Sequence
>GWHTAAZE009969 ATGAAGCCGTTTCTCATCGGTCAAGGCCTATACAAATTTGTTGATGGCACTTACCCAGCCCCTCTCTCCAATTCTATGACAGATCCTTCTTCCAATCCAGCGCTGCTTACTTGGAACCAACTAGATCAACTGGTTGTGAGTTACATCACTGCTACACTCACCAAAAATATCATCTCGATAACTATTGGTTGCGACACCGCCAAAGAAATATGGGACTGTCTTCAACGCCATTTTGCCCAGAAGTCTCTCGCCAGTGCTGCTTCTCTTCAATTCCAACTCATGGACATGAATAAAGGTTCTCAATCTGTTGATACATACCTTCAAAATGCCAAACAAATTGCCGACTCTCTCGCTTCTATCAACAAACCAATTGATCCTGAATATTTGGTCACGGCAACTCTTCGAGGCCTTGGACCAGACTATCTCATGCTCCGCACAGCTATTCTCCAATCACCGCCACTACCAACATTCTCTGACCTTCGATCTCGAATACTTGCATTTGAAGCCCAAAATCCTCACCTAAACACATCTTCTTCTCAACAACCCACTGCTCTTTACCATAATCATCCTCATTCTTCCTCTCAATTTACCTCCTCTACCCAATTCACCTCCAATGGCAATCGTAACAATCGAACCAATAACCGTGGAAATTCCAACAAAGGTGGTCATTTTCGTAATAATAATCGTGGCAGTACCAACAGTAACCGACACCACAATCCACCACAAAACCATGCTTCTCTACCCTCTAATTTCGGTTATCATGTTCAACCGATGTGGCAGCAGCAACAATGGGCTCAACGCTCCCTGGCACACTCTTCGTCTTGGCCCACTCCTGCGCCGGGTCTTCTTGGTCCGCCTCCAACTTGGTGTGCAACTTGCAATACCAACCAACATTCTCACGGCCAATGCCCCCATCGATACTCTGGCCCAACTACTTACCAACCTTTTGCTGGTGCTCATATGCTACAACCCCCCACTACTGCTAATCCAGTCTGGGCCCATGTAAAGATGGTCTTTATCCCCTACCGTTATCATCTCTTCACCAGTCCGCTGCCCCTCAAGCTCTCACCACTATTCACTCTTCAACCTGGCATCGTCGTCTTGGGTAACTCTGAATCAACCATGGTTCATTTGGACATTCAACCACTTGCACCTCCGCAGCCACTGCTGCTGAGCCAAGGCCCAACGCCTACCCCTTCTCACCGGGTTTCCTCTGACGGTAATCCACCTTGA

Network for GWHGAAZE009957

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0040

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF14223.7	Retrotran_gag_2	38	169	1.00E-18

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.129
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.085
	SRR3591713	Yellow flower	0.000
SRP173429	SRR8316895	Juvenile bud stage	0.874
	SRR8316896	Juvenile bud stage	1.141
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.619
	SRR8316900	Third green stage	1.560
	SRR8316901	Third green stage	0.834
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.726
	SRR8316903	Complete white stage	0.104
	SRR8316902	Silver flowering stage	0.334
	SRR8316904	Silver flowering stage	0.229
	SRR8316905	Silver flowering stage	0.144
	SRR8316906	Gold flowering stage	0.122
	SRR8316907	Gold flowering stage	0.523
	SRR8316908	Gold flowering stage	0.052
SRP132670	SRR6706286	Control	2.563
	SRR6706287	Light intensity 50%	3.075
	SRR6706288	Light intensity 20%	2.985
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.388
	CNS0095593	Slightly white alabastrum(diploid) 2	0.152
	CNS0095594	Slightly white alabastrum(diploid) 3	0.439
	CNS0095595	Whole white alabastrum(diploid) 2	0.204
	CNS0095596	Whole white alabastrum(diploid) 3	0.241
	CNS0095597	Whole white alabastrum(diploid) 4	0.153
	CNS0095598	Silvery flower (diploied) 1	0.964
	CNS0095599	Silvery flower (diploied) 2	0.748
	CNS0095600	Silvery flower (diploied) 3	1.421
	CNS0095601	Golden flower (diploid) 1	0.147
	CNS0095602	Golden flower (diploid) 2	1.180
	CNS0095603	Golden flower (diploid) 3	1.308
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.000
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	3.505
	CRR073298	Stem 2	2.225
	CRR073299	Stem 3	0.620
	CRR073300	Leaf 1	2.953
	CRR073301	Leaf 2	2.603
	CRR073302	Leaf 3	0.207
	CRR073303	Juvenile bud 1	0.166
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.450
	CRR073306	Third green 1	0.004
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.000
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.057
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.067
	CRR073318	Tawny withering 1	0.553
	CRR073319	Tawny withering 2	0.288
	CRR073320	Tawny withering 3	0.213