Gene detail

Detail information of GWHGAAZE009969

Functional Annotation

Database	Orthologs	Annotation
Nr	XP_011079533.1	PREDICTED: stachyose synthase [Sesamum indicum]
Swissprot	tr\|Q93XK2\|STSYN_PEA	Stachyose synthase (Precursor)
trEMBL	tr\|M5XML9\|M5XML9_PRUPE	Uncharacterized protein {ECO:0000313\|EMBL:EMJ22753.1}
TAIR10	AT4G01970.1	stachyose synthase

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	120836525	120839461	+
GWHAAZE00000002	mRNA	120836525	120839461	+
GWHAAZE00000002	exon	120836525	120838003	+
GWHAAZE00000002	exon	120838097	120838274	+
GWHAAZE00000002	exon	120838381	120838748	+
GWHAAZE00000002	exon	120838839	120839357	+
GWHAAZE00000002	exon	120839429	120839461	+
GWHAAZE00000002	CDS	120836525	120838003	+
GWHAAZE00000002	CDS	120838097	120838274	+
GWHAAZE00000002	CDS	120838381	120838748	+
GWHAAZE00000002	CDS	120838839	120839357	+
GWHAAZE00000002	CDS	120839429	120839461	+

Transcript Sequence
>GWHTAAZE009981 ATGGCACTTCCCAATGACACAGTTAATCCTGAGCTCTTTGTCCTCAAAAGCGAGAGTAAGGGCAAATGGTTTGATTTGTCCAATGGCAATTTATCTGTTAAAGATGTGCCTTTGCTCTCTCAAGTTCCTAATAATGTCTCTTTCAAAGGATTTTCCTCCATATGCCAATCCTCTGATGCTCCACTTCCCCTGTTTCAACGTGTTCAATCCACATCGTCCAAGGGTGGGTTCTTAGGACTCACTAAATCTGAACCATCCAATAGGTTGATGAACTCTCTGGGTAAGTTCATTGATAGGAATTTTGTCAGCGTTTTTAGGTTCAAGACATGGTGGTCTACCCAATGGGTTGGTAGTTGCGGGTCGGACTTGCAGATGGAGACCCAATGGGTACTCTTAGACGTCCCTGAAGTAAGTTCATATGTCCTTATTTTGCCCATTATTGAAGGGCAGTTTCGATCCGCCCTTCATCCGGGCACTGATGACCATGTCATGATTTGTGCCGAAAGCGGCTCTAATCAAGTGCAAAAATCATCTTTTGACGCTATTGCTTATGTTCATGTGTGCGACAATCCCTACAATTTGATGAAAGAGGCTTATAGTGCTGTTAGGGTCCATTTGAATACTTTTAGGCTCTTAGAAGAGAAACCGGTGACTCCCCTTGTTGACAAATTCGGTTGGTGCACTTGGGATGCCTTCTACTTAACTGTGGAACCTGCTGGTGTTTGGCATGGCGTTAAGGAATTCTCAAATGGAGGTCTGTCACCAAGGTTTATCATAGTTGATGATGGATGGCAAAGTATGAATTTAGATGGTGAGAACCCGAATGAGGATGCCAAAAATCTTGTTTTGGGCGGGACCCAAATGAATGCTAGGCTTCATAGGTTTGATGAAGGTGAGAAATTTAGACAATACAAAGGTGGGTCCATGATGGGGCCTAATCCTCCTCCATTTGACCCAAAGAAGCCTAAGATGTTGATTGCAAAGGCTATTGAGCTCGAGCACGCTGGCAAGTCACGTGACAAGGCAATTCTATCCGGGACCAAAGATTTGTCCCATTTTGAATCGCAAGTTGACAAGTTGAAGGAAGAATTGAACAACATGTTTGGTCGCAAGAAGGAAAGCGCCACTGGCCAAAGCTGTGGAAGCCGCAGTTACAATAAATCTGAAAATTTTGGGTTGAAGGCTTTTACTAAAGATTTGAGGGAGAGTTTCAAGGGGTTGGATGATATTTATGTTTGGCACGCGCTTTTTGGTGCTTGGGGTGGGGTGAGGCCAAAAACTACGAATCTCAATTCATATATAACTCCTTGCAAAGTGTCACCTGGACTTGATGGGTCAATGGATGATCTTGCAGTGACAAAAATTGTTGAAGGTGGCATTGGGCTTGTTCATCCTGATGAAGCTGGTGATTTCTATGAATCAATGCACTCCCACCTATCTGATTCTGGAATTACAGGTGTTAAAGTGGATGTTATTCATGCAGTTGAATATGTGGGTGATGAACATGGCGGCAGGGTTGAGCTAGCAAAGGCTTACTACAAAGGGCTTTCCAAATCTGTTTGTAAGAACTTCAATGGCACTGGACTTATCTCTAGCATGGAACAATGCAATGACTTCTTTTTCCTTGGGACAGAGCAGATATCTATGGGAAGAGTCGGTGATGACTTCTGGTTCCAAGATCCCAATGGGGATCCAAATGGAATTTACTGGTTACAAGGGGTCCACATGATCCACTGCGCTTACAACAGCATGTGGATGGGTCAGATCATCCAACCCGATTGGGATATGTTCCAATCGGACCATCTTTGTGCAAAATTCCATGCAGGGTCAAGGGCTATTTGTGGGGGGCCTATTTATGTGAGTGACTCATTAGGTGGTCACGACTTTGATCTTCTGAAGAAACTTGTGTTTCCAGATGGTACCATCCCCAAGTGCCAATATTTTGCTCTCCCAACAAGAGACTGCCTCTTCAAAAACCCTCTTTTTGATAGCAAGACCGTCCTCAAAATTTGGAACTTTAACAAGTATGGAGGTGTCATCGGTGCTTTCAACTGTCAAGGGGCGGGATGGGATTCCAAAGAACAAAGGATCAAGGGCTATTCTGAATGCTACAAACCAATGTTGGGTTCAATTCATGTAGGTGACATTGAATGGGACCAGGACAAGGAAGCAATGGCAATGGGTGAAGTTGATGAATATGCAGTCTATCTAAACCAGGCAGAGAAACTAGTCTTAACTATGCCCAGTTCTGATGCCATTCGGATCACAATTCAGCCCTCCGCGTTTGAGATTTTCAGTTTTGTTCCAGTCAAGGGTTTTGGGCAGGCTTATAAGTTTGCACCAATTGGGCTAACTAACATGTTTAACAGTGGAGGAACCATACGGGAGTTCGAGTACAGTGATAATGGTGTCAAAATTAAAGTGAAAGGTGGAGGGGATTTCTTAGCCTACTCAAGTTCGCTGCCGAAGAAATGTTATTTGAATGGTGAAGAAGTTGGCTTCCAGTGGTCGGCTGATGGCAAATTGCGCTTGAACCTTCCATGGGGTAGTAAGCTTAGGATCTTCCGAGTGCCGTAA

Network for GWHGAAZE009969

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF05691.13	Raffinose_syn	24	845	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K06611	E2.4.1.67	Metabolic pathways	map01100
K06611	E2.4.1.67	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	4.171
	SRR3591706	second leaf	2.522
	SRR3591707	mature leaf	0.273
	SRR3591708	Shoot apex	1.409
	SRR3591709	Stem	1.293
	SRR3591710	White floral bud	1.140
	SRR3591711	White flower	1.213
	SRR3591712	Green floral bud	7.568
	SRR3591713	Yellow flower	0.047
SRP173429	SRR8316895	Juvenile bud stage	2.621
	SRR8316896	Juvenile bud stage	2.502
	SRR8316897	Juvenile bud stage	0.973
	SRR8316894	Third green stage	1.000
	SRR8316900	Third green stage	1.171
	SRR8316901	Third green stage	1.468
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	1.200
	SRR8316903	Complete white stage	0.295
	SRR8316902	Silver flowering stage	0.014
	SRR8316904	Silver flowering stage	0.110
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.082
	SRR8316908	Gold flowering stage	0.066
SRP132670	SRR6706286	Control	1.841
	SRR6706287	Light intensity 50%	1.862
	SRR6706288	Light intensity 20%	2.218
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.463
	CNS0095593	Slightly white alabastrum(diploid) 2	3.441
	CNS0095594	Slightly white alabastrum(diploid) 3	2.855
	CNS0095595	Whole white alabastrum(diploid) 2	1.469
	CNS0095596	Whole white alabastrum(diploid) 3	1.134
	CNS0095597	Whole white alabastrum(diploid) 4	1.205
	CNS0095598	Silvery flower (diploied) 1	2.265
	CNS0095599	Silvery flower (diploied) 2	5.078
	CNS0095600	Silvery flower (diploied) 3	0.555
	CNS0095601	Golden flower (diploid) 1	2.678
	CNS0095602	Golden flower (diploid) 2	0.720
	CNS0095603	Golden flower (diploid) 3	0.701
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.239
	CNS0095605	Slightly white alabastrum(tetraploid) 2	3.286
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.745
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.587
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.740
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.537
	CNS0095610	Silvery flower (tetraploid) 1	0.864
	CNS0095611	Silvery flower (tetraploid) 2	0.777
	CNS0095612	Silvery flower (tetraploid) 3	0.430
	CNS0095613	Golden flower (tetraploid) 1	0.079
	CNS0095614	Golden flower (tetraploid) 2	0.646
	CNS0095615	Golden flower (tetraploid) 3	0.143
CRA001975	CRR073297	Stem 1	4.171
	CRR073298	Stem 2	4.022
	CRR073299	Stem 3	4.482
	CRR073300	Leaf 1	1.052
	CRR073301	Leaf 2	1.468
	CRR073302	Leaf 3	1.653
	CRR073303	Juvenile bud 1	0.328
	CRR073304	Juvenile bud 2	0.429
	CRR073305	Juvenile bud 3	0.722
	CRR073306	Third green 1	0.038
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.216
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.000
	CRR073311	Second white 3	0.021
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	1.285
	CRR073316	Gold flowering 2	2.241
	CRR073317	Gold flowering 3	2.939
	CRR073318	Tawny withering 1	0.939
	CRR073319	Tawny withering 2	0.757
	CRR073320	Tawny withering 3	1.342