Gene detail

Detail information of GWHGAAZE009971

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_002301527.2	0	hypothetical protein POPTR_0002s19350g [Populus trichocarpa]
Swissprot	tr\|Q9SYJ2\|GPAT3_ARATH	0	Probable glycerol-3-phosphate acyltransferase 3
trEMBL	tr\|B9GSW2\|B9GSW2_POPTR	0	Uncharacterized protein {ECO:0000313\|EMBL:EEE80800.2}
TAIR10	AT4G01950.1	1E-157	glycerol-3-phosphate acyltransferase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	120979956	120982449	+
GWHAAZE00000002	mRNA	120979956	120982449	+
GWHAAZE00000002	exon	120979956	120980627	+
GWHAAZE00000002	exon	120981556	120982449	+
GWHAAZE00000002	CDS	120979956	120980627	+
GWHAAZE00000002	CDS	120981556	120982449	+

Transcript Sequence
>GWHTAAZE009983 AACCCAAAAGGTCTCCTCCTGAGAAACTTTAGCAACACCCTTGCTAATAATCCTCATCACTCTAAACTTCAAAAGCACGCTTCCCTTGCTCAGAGGCCGGACTTGTCGGACTATACTTTAATCTTTAACGTGGAAGAATCTTTGTTGAAATCCTCCTCGCCCCTCTTTCGTTACTTCATGCTGATGGCCTTTGAAGCTGGAAGCCCTGCAAGAGCTTTCCTTCTCCTTGTTTTGTACCCTTTTATGTGTTTGGTGAGCCAAGGGGTGTCGTTGAAGATAATGGTAATGGTGTGCTTTTTTGGGATCAAGAAAGAGAGGTTTAGCGTAATTTGGAGTGGAGTTCTGCCAAAGTTCATGATGGAGGATGTTGGTGAGGAAGGGTATGAGGTATTGAGGAGGGGAGGGAAGAGGGTGGGAGTGAGCGATTTGCCTCAAGTGATGGTTGAGAGTTTCTTGAAAGATTATTTAGAGATTGAGTTTGTGGTTGGAAGGGATCTTCGAGTGTTTTGTGGCTACTTTGTTGGGGTAATGGAACAGAGGAAGAGCATTCATGATCATTATTTTGAGGAGATCATAGTTGATGAAGATGACGGCAAGTGTTGCTCCAGCTTTATTGGAATTACTAACTCCATCAAATCCAGTGCTGAACATCATTGGTTCTCTCATTGCAAGGAGATATACGTGTTGAGTGAAGGAGACAAGAGAAAATGGCATCCTCTTCCTAGGGCCAAATATCCCAACCCACTCATCTTTCATGACGGTAGATTAGCTTTCACACCTACCCCACTTGCCACTCTGTCCATGTTCATGTGGTTCCCATTTGCTATTACTCTTTCCCTAATTAGGGCCATTATTGCTCTTTCATTCCCCTACAGCCTATCTATTCCCGTATTAGCCTTCACGGGGATCCAACTCAAGCTCACAAAACCCAACTCCTCCCACCCCCCGGGGGAACCAAACAACAAGCTGCCGAAAGGACTCCTTTACATATGTAACCACAGGACGCTGCTTGACCCTTTATTCCTTTCCTTTGGACTCAAGAAACCGTTTGCTGCTGTCACCTACAGCCTCAGCAGAATGTCAGAGTTCTTGTCCCCTATAAAGACCTTCCGATTGACAAGGGACAGAGATCAGGATGCTAAAATGATGGAGAGATATTTGAATCAAGGGGACCTTGTTGTTTGCCCCGAAGGGACCACTTGCAGGGAGCCTTTCCTGCTGCGATTCAGCCCTTTGTTTTCAGAGTTGAGTGATGATATAGTACCAGTTGGGATGGACACTCATGTTAGCATGTTCTATGGGACAACAGCGGGTGGACTAAAGTGCTTGGACCCATTCTTCTTCCTTATGAACCCGTGTCCGAGTTATAGCATGGAGTTTCTGGAGAAGGTGCGTGGGGCGTTGAGGTGTAGACAAGGTGGAAAATCAAAGTTTGAAGTGGCGAATTACGTGCAGAGTGAGATTGGGAAGGCTTTGGGGTTCGAGTGTACCGCCCTTACTAGAAATGATAAGTACTTGATCCTTGCTGGCAACGATGGAATAACTTCTACTAGCAAGGTTAGGTGA

Network for GWHGAAZE009971

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01553.22	Acyltransferase	325	411	2.50E-07

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K13508	GPAT	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Glycerolipid metabolism	map00561
		Glycerophospholipid metabolism	map00564

Gene Ontology

GO term	Ontology	Name
GO:0016746	molecular_function	transferase activity, transferring acyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	2.525
	SRR3591706	second leaf	0.410
	SRR3591707	mature leaf	0.436
	SRR3591708	Shoot apex	0.376
	SRR3591709	Stem	1.279
	SRR3591710	White floral bud	0.283
	SRR3591711	White flower	0.487
	SRR3591712	Green floral bud	0.558
	SRR3591713	Yellow flower	0.204
SRP173429	SRR8316895	Juvenile bud stage	0.160
	SRR8316896	Juvenile bud stage	0.139
	SRR8316897	Juvenile bud stage	0.000
	SRR8316894	Third green stage	0.087
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.045
	SRR8316898	Complete white stage	0.000
	SRR8316899	Complete white stage	0.184
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.182
	SRR8316904	Silver flowering stage	0.132
	SRR8316905	Silver flowering stage	0.000
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.257
SRP132670	SRR6706286	Control	0.000
	SRR6706287	Light intensity 50%	0.022
	SRR6706288	Light intensity 20%	0.124
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.093
	CNS0095593	Slightly white alabastrum(diploid) 2	0.018
	CNS0095594	Slightly white alabastrum(diploid) 3	0.078
	CNS0095595	Whole white alabastrum(diploid) 2	0.090
	CNS0095596	Whole white alabastrum(diploid) 3	0.093
	CNS0095597	Whole white alabastrum(diploid) 4	0.250
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.000
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.108
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.000
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.000
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.059
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.133
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.057
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.000
	CNS0095610	Silvery flower (tetraploid) 1	0.154
	CNS0095611	Silvery flower (tetraploid) 2	0.045
	CNS0095612	Silvery flower (tetraploid) 3	0.000
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.065
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.042
	CRR073298	Stem 2	0.194
	CRR073299	Stem 3	0.405
	CRR073300	Leaf 1	0.197
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.067
	CRR073303	Juvenile bud 1	0.322
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.347
	CRR073306	Third green 1	2.370
	CRR073307	Third green 2	0.653
	CRR073308	Third green 3	1.475
	CRR073309	Second white 1	0.000
	CRR073310	Second white 2	0.057
	CRR073311	Second white 3	0.000
	CRR073312	Silver flowering 1	0.000
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.000