Detail information of GWHGAAZE009972


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_011079524.10PREDICTED: long chain acyl-CoA synthetase 1 [Sesamum indicum]
Swissprottr|O22898|LACS1_ARATH0Long chain acyl-CoA synthetase 1
trEMBLtr|D7U2L2|D7U2L2_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CBI36978.3}
TAIR10AT2G47240.20AMP-dependent synthetase and ligase family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene120991697120997069-
GWHAAZE00000002mRNA120991697120997069-
GWHAAZE00000002exon120991697120991741-
GWHAAZE00000002exon120991861120991983-
GWHAAZE00000002exon120992154120992336-
GWHAAZE00000002exon120992429120992568-
GWHAAZE00000002exon120992651120992896-
GWHAAZE00000002exon120993028120993145-
GWHAAZE00000002exon120993644120993719-
GWHAAZE00000002exon120993841120993907-
GWHAAZE00000002exon120994008120994119-
GWHAAZE00000002exon120994458120994568-
GWHAAZE00000002exon120995313120995480-
GWHAAZE00000002exon120995671120995765-
GWHAAZE00000002exon120995836120995875-
GWHAAZE00000002exon120995967120996043-
GWHAAZE00000002exon120996186120996234-
GWHAAZE00000002exon120996336120996392-
GWHAAZE00000002exon120996536120996625-
GWHAAZE00000002exon120996711120996774-
GWHAAZE00000002exon120996924120997069-
GWHAAZE00000002CDS120996924120997069-
GWHAAZE00000002CDS120996711120996774-
GWHAAZE00000002CDS120996536120996625-
GWHAAZE00000002CDS120996336120996392-
GWHAAZE00000002CDS120996186120996234-
GWHAAZE00000002CDS120995967120996043-
GWHAAZE00000002CDS120995836120995875-
GWHAAZE00000002CDS120995671120995765-
GWHAAZE00000002CDS120995313120995480-
GWHAAZE00000002CDS120994458120994568-
GWHAAZE00000002CDS120994008120994119-
GWHAAZE00000002CDS120993841120993907-
GWHAAZE00000002CDS120993644120993719-
GWHAAZE00000002CDS120993028120993145-
GWHAAZE00000002CDS120992651120992896-
GWHAAZE00000002CDS120992429120992568-
GWHAAZE00000002CDS120992154120992336-
GWHAAZE00000002CDS120991861120991983-
GWHAAZE00000002CDS120991697120991741-
Transcript Sequence

Network for GWHGAAZE009972

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00501.29AMP-binding685302.30E-105
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K01897ACSL, fadD Metabolic pathways map01100
Fatty acid metabolismmap01212
Fatty acid biosynthesismap00061
Fatty acid degradationmap00071
Peroxisomemap04146
Ferroptosismap04216
Quorum sensingmap02024
Adipocytokine signaling pathwaymap04920
PPAR signaling pathwaymap03320
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0003824molecular_functioncatalytic activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf23.336
SRR3591706second leaf105.857
SRR3591707mature leaf48.346
SRR3591708Shoot apex121.800
SRR3591709Stem10.103
SRR3591710White floral bud21.302
SRR3591711White flower17.733
SRR3591712Green floral bud71.378
SRR3591713Yellow flower11.897
SRP173429 SRR8316895Juvenile bud stage 81.003
SRR8316896Juvenile bud stage 98.325
SRR8316897Juvenile bud stage 32.375
SRR8316894Third green stage 36.112
SRR8316900Third green stage 99.419
SRR8316901Third green stage 84.385
SRR8316898Complete white stage 7.114
SRR8316899Complete white stage 80.318
SRR8316903Complete white stage 8.867
SRR8316902Silver flowering stage3.309
SRR8316904Silver flowering stage4.307
SRR8316905Silver flowering stage1.974
SRR8316906Gold flowering stage 4.159
SRR8316907Gold flowering stage 2.231
SRR8316908Gold flowering stage 4.577
SRP132670SRR6706286Control74.996
SRR6706287Light intensity 50%91.213
SRR6706288Light intensity 20%113.135
CNP0000432CNS0095592Slightly white alabastrum(diploid) 125.102
CNS0095593Slightly white alabastrum(diploid) 222.595
CNS0095594Slightly white alabastrum(diploid) 327.581
CNS0095595Whole white alabastrum(diploid) 222.693
CNS0095596Whole white alabastrum(diploid) 315.687
CNS0095597Whole white alabastrum(diploid) 416.378
CNS0095598Silvery flower (diploied) 140.508
CNS0095599Silvery flower (diploied) 221.232
CNS0095600Silvery flower (diploied) 310.539
CNS0095601Golden flower (diploid) 122.300
CNS0095602Golden flower (diploid) 213.048
CNS0095603Golden flower (diploid) 312.394
CNS0095604Slightly white alabastrum(tetraploid) 139.131
CNS0095605Slightly white alabastrum(tetraploid) 223.308
CNS0095606Slightly white alabastrum(tetraploid) 3111.586
CNS0095607Whole white alabastrum(tetraploid) 110.139
CNS0095608Whole white alabastrum(tetraploid) 27.558
CNS0095609Whole white alabastrum(tetraploid) 359.906
CNS0095610Silvery flower (tetraploid) 19.402
CNS0095611Silvery flower (tetraploid) 27.311
CNS0095612Silvery flower (tetraploid) 34.599
CNS0095613Golden flower (tetraploid) 11.485
CNS0095614Golden flower (tetraploid) 24.887
CNS0095615Golden flower (tetraploid) 30.921
CRA001975CRR073297Stem 1104.732
CRR073298Stem 293.103
CRR073299Stem 383.249
CRR073300Leaf 1103.430
CRR073301Leaf 288.975
CRR073302Leaf 389.720
CRR073303Juvenile bud 166.141
CRR073304Juvenile bud 230.636
CRR073305Juvenile bud 359.719
CRR073306Third green 11.544
CRR073307Third green 20.722
CRR073308Third green 31.792
CRR073309Second white 11.865
CRR073310Second white 20.989
CRR073311Second white 30.881
CRR073312Silver flowering 10.230
CRR073313Silver flowering 20.688
CRR073314Silver flowering 31.387
CRR073315Gold flowering 1127.278
CRR073316Gold flowering 2110.258
CRR073317Gold flowering 3118.468
CRR073318Tawny withering 13.438
CRR073319Tawny withering 24.671
CRR073320Tawny withering 33.299