Gene detail

Detail information of GWHGAAZE009979

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	KDP28299.1	0	hypothetical protein JCGZ_14070 [Jatropha curcas]
Swissprot	tr\|Q9FXB2\|GOLS2_ARATH	3E-177	Galactinol synthase 2
trEMBL	tr\|A0A067K918\|A0A067K918_JATCU	0	Uncharacterized protein {ECO:0000313\|EMBL:KDP28299.1}
TAIR10	AT1G56600.1	1E-141	galactinol synthase 2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	121151047	121152795	+
GWHAAZE00000002	mRNA	121151047	121152795	+
GWHAAZE00000002	exon	121151047	121151367	+
GWHAAZE00000002	exon	121151798	121152100	+
GWHAAZE00000002	exon	121152256	121152390	+
GWHAAZE00000002	exon	121152499	121152795	+
GWHAAZE00000002	CDS	121151047	121151367	+
GWHAAZE00000002	CDS	121151798	121152100	+
GWHAAZE00000002	CDS	121152256	121152390	+
GWHAAZE00000002	CDS	121152499	121152795	+

Transcript Sequence
>GWHTAAZE009991 ATGGCTCCTGCGCTTATTGAAGATGCTGCGGCGGTGGCAAACAGAACAGGAGGTAAGAGGAGAGCGTACGTGACGTTCTTGGCGGGTAACGGTGACTACGTGAAAGGGGTGGTGGGATTGGCAAAGGGTTTGAGGAAGTCCAACTCTGCCTATCCACTCGTCGTTGCCATTCTTCCAGACGTGCCGGAGGAACACCGCCTTATACTGGAGGATCAGGGCTGCATCGTCAGGGAAATTGAACCCGTTTACCCGCCCGACAACCACACCCAGTTTGCCATGGCCTATTACGTCATCAACTATTCCAAGCTCCGTATTTGGGAGTTTGTGGAATATGAGAGGATGATATACCTGGATGGGGACATCCAAGTGTACGACAACATAGACCATCTATTTGAGCTGCCGGAGGGTCATTTCTACGCGGTCATGGATTGCTTCTGCGAGAAGACATGGAGCCACAGCCCTCAGTACAAGATCGGTTACTGCCAGCAATGCCCTGACAGAGTCAAGTGGCCTGTGGATGATGAGAAGTTGGGTCAGCAGCCCCCTTCCCTCTACTTCAATGCTGGCATGTTCGTGTTTGAACCCAGCCTCTCCACTTACCACAATCTCCTCAACACCCTCAAGGACTATTTGAATATGTTCTTTAGGGACATTTACAAACCAATTCCTTTGGAGTACAACCTTGTACTTGCGATGCTATGGCGCCACCCAGAAAAGGTAGACCTTGACAAGGTTAAGGTCGTTCATTACTGTGCAGCGGGATCAAAGCCATGGAGGTACACGGGGAAGGAAGAGAATATGGAGAGGGAAGACATTAAGATGCTGGTGAAGAAGTGGTGGGATATCTACGACGACAGATCTTTGGACTACAAGAAGCAGCCTATATTGAAGCCTGTAGCACTAGGGAAAACAACAACATCTAGCAACTACATTGTGAGCAGCGATAATGTTAGCGGGGAAGCCCATGAACATGTGGCTGCTTTGCAGCCCCTAATTAAACAGGCTATTTCTGATAGTAGTCGTCTACAATGCGTGACTGCTCCATCGGCAGCTTAA

Network for GWHGAAZE009979

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01501.21	Glyco_transf_8	25	261	6.30E-34

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K18819	GOLS	Metabolic pathways	map01100
K18819	GOLS	Galactose metabolism	map00052

Gene Ontology

GO term	Ontology	Name
GO:0016757	molecular_function	transferase activity, transferring glycosyl groups

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	3.945
	SRR3591707	mature leaf	26.531
	SRR3591708	Shoot apex	0.503
	SRR3591709	Stem	1.548
	SRR3591710	White floral bud	149.696
	SRR3591711	White flower	9.785
	SRR3591712	Green floral bud	218.317
	SRR3591713	Yellow flower	5.275
SRP173429	SRR8316895	Juvenile bud stage	27.156
	SRR8316896	Juvenile bud stage	78.154
	SRR8316897	Juvenile bud stage	73.914
	SRR8316894	Third green stage	27.451
	SRR8316900	Third green stage	81.935
	SRR8316901	Third green stage	103.685
	SRR8316898	Complete white stage	0.553
	SRR8316899	Complete white stage	0.620
	SRR8316903	Complete white stage	0.459
	SRR8316902	Silver flowering stage	2.206
	SRR8316904	Silver flowering stage	3.358
	SRR8316905	Silver flowering stage	0.939
	SRR8316906	Gold flowering stage	6.370
	SRR8316907	Gold flowering stage	5.084
	SRR8316908	Gold flowering stage	4.485
SRP132670	SRR6706286	Control	41.787
	SRR6706287	Light intensity 50%	40.226
	SRR6706288	Light intensity 20%	37.426
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	99.723
	CNS0095593	Slightly white alabastrum(diploid) 2	70.507
	CNS0095594	Slightly white alabastrum(diploid) 3	137.251
	CNS0095595	Whole white alabastrum(diploid) 2	151.674
	CNS0095596	Whole white alabastrum(diploid) 3	182.679
	CNS0095597	Whole white alabastrum(diploid) 4	178.202
	CNS0095598	Silvery flower (diploied) 1	6.117
	CNS0095599	Silvery flower (diploied) 2	23.101
	CNS0095600	Silvery flower (diploied) 3	7.240
	CNS0095601	Golden flower (diploid) 1	19.227
	CNS0095602	Golden flower (diploid) 2	6.324
	CNS0095603	Golden flower (diploid) 3	5.577
	CNS0095604	Slightly white alabastrum(tetraploid) 1	244.964
	CNS0095605	Slightly white alabastrum(tetraploid) 2	279.779
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.605
	CNS0095607	Whole white alabastrum(tetraploid) 1	363.427
	CNS0095608	Whole white alabastrum(tetraploid) 2	379.871
	CNS0095609	Whole white alabastrum(tetraploid) 3	185.929
	CNS0095610	Silvery flower (tetraploid) 1	5.263
	CNS0095611	Silvery flower (tetraploid) 2	15.461
	CNS0095612	Silvery flower (tetraploid) 3	36.710
	CNS0095613	Golden flower (tetraploid) 1	17.016
	CNS0095614	Golden flower (tetraploid) 2	6.554
	CNS0095615	Golden flower (tetraploid) 3	14.667
CRA001975	CRR073297	Stem 1	35.738
	CRR073298	Stem 2	47.898
	CRR073299	Stem 3	23.507
	CRR073300	Leaf 1	79.970
	CRR073301	Leaf 2	62.841
	CRR073302	Leaf 3	47.524
	CRR073303	Juvenile bud 1	47.641
	CRR073304	Juvenile bud 2	39.151
	CRR073305	Juvenile bud 3	3.418
	CRR073306	Third green 1	13.465
	CRR073307	Third green 2	16.620
	CRR073308	Third green 3	16.371
	CRR073309	Second white 1	1.171
	CRR073310	Second white 2	4.015
	CRR073311	Second white 3	5.803
	CRR073312	Silver flowering 1	13.403
	CRR073313	Silver flowering 2	15.885
	CRR073314	Silver flowering 3	11.036
	CRR073315	Gold flowering 1	25.718
	CRR073316	Gold flowering 2	13.644
	CRR073317	Gold flowering 3	11.683
	CRR073318	Tawny withering 1	18.339
	CRR073319	Tawny withering 2	21.005
	CRR073320	Tawny withering 3	16.828