Gene detail

Detail information of GWHGAAZE009987

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CBI37016.3	0	unnamed protein product [Vitis vinifera]
Swissprot	tr\|Q3Y8L7\|DAW1_CHLRE	0.0000007	Dynein assembly factor with WDR repeat domains 1
trEMBL	tr\|F6HZE0\|F6HZE0_VITVI	0	Putative uncharacterized protein {ECO:0000313\|EMBL:CCB60055.1}
TAIR10	AT4G01860.2	0	Transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	121395871	121416413	+
GWHAAZE00000002	mRNA	121395871	121416413	+
GWHAAZE00000002	exon	121395871	121395986	+
GWHAAZE00000002	exon	121396138	121396439	+
GWHAAZE00000002	exon	121396547	121396664	+
GWHAAZE00000002	exon	121397125	121397207	+
GWHAAZE00000002	exon	121398548	121398744	+
GWHAAZE00000002	exon	121398840	121398945	+
GWHAAZE00000002	exon	121399760	121399842	+
GWHAAZE00000002	exon	121400146	121400355	+
GWHAAZE00000002	exon	121402168	121402527	+
GWHAAZE00000002	exon	121403059	121403230	+
GWHAAZE00000002	exon	121404215	121404406	+
GWHAAZE00000002	exon	121404607	121404744	+
GWHAAZE00000002	exon	121404898	121404990	+
GWHAAZE00000002	exon	121405772	121405830	+
GWHAAZE00000002	exon	121412872	121412997	+
GWHAAZE00000002	exon	121413236	121413440	+
GWHAAZE00000002	exon	121413522	121413787	+
GWHAAZE00000002	exon	121413885	121413965	+
GWHAAZE00000002	exon	121414089	121414174	+
GWHAAZE00000002	exon	121414809	121415330	+
GWHAAZE00000002	exon	121415991	121416144	+
GWHAAZE00000002	exon	121416317	121416413	+
GWHAAZE00000002	five_prime_UTR	121395871	121395874	+
GWHAAZE00000002	CDS	121395875	121395986	+
GWHAAZE00000002	CDS	121396138	121396439	+
GWHAAZE00000002	CDS	121396547	121396664	+
GWHAAZE00000002	CDS	121397125	121397207	+
GWHAAZE00000002	CDS	121398548	121398744	+
GWHAAZE00000002	CDS	121398840	121398945	+
GWHAAZE00000002	CDS	121399760	121399842	+
GWHAAZE00000002	CDS	121400146	121400355	+
GWHAAZE00000002	CDS	121402168	121402527	+
GWHAAZE00000002	CDS	121403059	121403230	+
GWHAAZE00000002	CDS	121404215	121404406	+
GWHAAZE00000002	CDS	121404607	121404744	+
GWHAAZE00000002	CDS	121404898	121404990	+
GWHAAZE00000002	CDS	121405772	121405830	+
GWHAAZE00000002	CDS	121412872	121412997	+
GWHAAZE00000002	CDS	121413236	121413440	+
GWHAAZE00000002	CDS	121413522	121413787	+
GWHAAZE00000002	CDS	121413885	121413965	+
GWHAAZE00000002	CDS	121414089	121414174	+
GWHAAZE00000002	CDS	121414809	121415330	+
GWHAAZE00000002	CDS	121415991	121416144	+
GWHAAZE00000002	CDS	121416317	121416413	+

Transcript Sequence
>GWHTAAZE009999 AAAGATGATGAGAGAAAGCGAAAGGGGCAGAATGAAAAGCGGGGAGTACCTGGGAGAAATATCTGCCCTCTGCTTTCTCCACGCACCACCCCCTCTTCTTCCTTTTCTCCTCGCTGGAACGGGTTCCCAAATTATTTTGTACAATGTAGTAACGGGGAAAATGATAAGTTCATTTCAAGTTTTCCAAGGTATTCGTGTCCATGGCATTTCCTCCACCATTATTGATTTTGATTCCACACAACCACCATCCTCTTCCTCCTCCTTTAAAGTCGCTGTTTTTGGAGAAAGGAGAGTCAAGCTGTTTAGCTTACACATTGACTCCCATAGTAATAATCAACTACAAGTATGCGTCGACTTGATCCCTTTTCATTCCCTCCCAAAATTTAGTCACTGGGTTTTGGATGTCCGCTTCTTAAAGGACCGTGTAACTTCTTCGCACGACGGAAACCATTGTCTTGCCATTGGATGCAGTGACAACACTGTTTACTTCTGGGATATTCTGCATTCTATTATCAACTTTGAAGTCAGCTGTCCAGACAGGTGTCTTTTGTATTCCATGCGGATGTGGGGCGACCAAGTTGAAGCTCTCTGTATTGCATCTGGTACTATTTATAATGAGATTATTGTCTGGAAAGTAATATGTCCTGTGAAAGACTGCTTAAAGCCAGCCAATTCTTTTGACGTGGACCTCCAGCATCAATTCCAGCAACATGAAGCCTTTCATGTATGTAGACTTTCTGGACACGAAGGTTCAATTTTTCGCATTGCATGGTCCTCCAACGGATCAAAACTTCTGTCTGCTTCTGATGATCGCTGTGCTCGAATCTGGTCAGTTAATACTGAAAGGGAAGGTTTTGATAATCCCACACAGGAGGTCGTTTCTCACTCAGTTGGCCCGGTGCTATTTGGTCACAGTGCCAGGTTAATTATTACTGTTGGCGAAGATTGCACATGTCGTGTCTGGGGATTGGATGGGATCCAACTTAAGATGATCAAGGAGCATGTAGGGAGGGGAGTGTGGAGATGCTTGTATGATCCAAATTCTTCTCTTCTTGTTACTGCGGGTTTTGATTCTGCTATAAAAGTGCATCAGCTGGATGTTTGTTTGTCTGAGGGCTCCGACAGATCGATTGAGGTGGTAGAAGGCATTGATAAAAAAGAGATTTTTACTCTCCGCATCCCAAATTCTTCGGGGCATGTTGGACTCATGGACAGCAAAAGTGAATATGTCCGTTGTTTGCAGTTTATTCGTGAAGACACGTTTTATGTTGCCACAAACAATGGTTATCTGTTCCATGCCAAACTATGTGATACTGGTGAAGTGATTTGGACTGAACTTGTCCGTGTAAATGAAGATGCTCCAATTGTTTGTATGAACTTGTTGTCCACATGGCCTTCCGACCTTTCTTGTTGTATTGAGGATTGGGTTGCTGTTGGAGATGGTAAAGGAAGAACGACGGTTGTGAGCATTCTTGCTGATGCTGGGACTCCCAAAATGGGACTGACCTATACCTGGTCTGCTGAAAAAGAGAGACAACTCTTAGGAACTTTTTGGTGCAAATCATTGGGATATAGGTTCATCTTCACTGCTGATCCTAGAGGAACACTGAAGCTATGGAGGTTATGCAGTCATTCAGAATCTGTAGCTCACATTTCTATGAGAAGCTGCAATGCAACTCTACTAGCAGAATTTGTCTCATGTTTTGGAATAAGGTTGATGTGTTTGGATGCGTTGCTTGAGGAAGAGGTGCTGGTGTGTGGGGATCTGCGTGGTAATTTGGTACTATTTCCGTTGCTGAGGGGCCTATTCCTGGGTACATTCATTTCATCAGAAGCAAAAATAGATCCTTTAAGTTACTTCAAAGGAGGCCATGGGATATCATGTGTATGCAGTGTTTCTATAGCTACTTCTGGTTCTAGTCAAGTTGAAATACACTCGACTGGAGGAGATGGGTGCATATGCTATTTGGAATACGATAAAGACCAGCGATGTTTGGAATTTATAGGGATGAAACAAGTAAAAGAATTAAGCTTGATTCGATCTGTCCTTTCCGATACTAACTTCTATGGCGAGTTGGTGGTTCAAATTCCATGCGGTGGATGGCGGCGCCCACATTCGTATTATCTTGGTGACGTACCAGAGAAGAAGAATTGCTTTGCATTTGTCAAGCGAGGTGGTGGCAGCTATTCTGGGTTTTTGGTACAGGTGGGTGATGGCCTTCGAGTCAGAGAGATGCACTCATTGTGTTTTATTTCCGAAGATTCACGAGTTGGTTCTACTGAAAATAAGTTCCCCTGTATAGAACCTAGTTGGATTGCAACGGGGTGCGAGGATGGAACTGTGAGATTGACTAGGTATGATCCGGGCGTTGAGAATTGGTCAGCATCGAAACTTCTCGGGGAACATGTGGGTGGATCAGCTGTGAGATCGATATGTTCTGTATCAAAGATGCATATAATCGCGGCGGCAGACATGCCTGATGGAATTGATAGAAAAAAGACCACTACCTTAGTGGATGGAGAGAATCCTTTCTTACTAATTTCAGTTGGCGCAAAGAGGGGTCATCCCTCATTAGGAGCGTTATCATCGATCTCATTCCAGTGGCTCTCCACCGATATGCCAACCAGAAATTGTAGCACTCGCAAAAAAGGAAGGAATGTTCAGAAAACAGCTGAAAATTGTTGTAATGAGAATTCTGATTCAGCGGTTTCTCCGAAAAGCAACAAGAACATGGACTCAAAATCAAGTATCCCTGGGGATGAATATGAAAATGACTGGAGATACCTTGCTGTTACTGCTTTCCTTGTTAAAGTTGCTGATAGCAGGATATCTGTTTGTTTCATAGTTGTTGCTTGCTCGGATGCTACTGTTGCATTAAGGGCTCTTGTATTACCTTATAGACTTTGGTTTGACGTTGCTTTATTTGTCCCCTTGGCATCGCCAGTTCTGGCATTGCAACATGTCATCATTCCTGAGCATCTGCTTTCAGAGGATAACTATCCAATGGGAGGTCTTTATATTGTAATTAGCGGATCTACTGATGGAAGCATCGCCTTATGGGATTTGAGTGAAAATGTTTCAACTTTTATGCGGCGAGTGTCTGCCCTTCAATTCAACGACTGCATTGATGGCCAGAAAAGGCCACGCACTGGTAGAGGAAGCCAGGGTGGACGATGGTGGAGATCATTATACAGTAGTAGCGTTTCAAACAAAAAAGCAGGTGATAGTTCTTCAACCCTAGAAAAGAAAACTGATGACGAGCCATCTGGGACATCATCGAATTCTTCTTCTCATGTTGAAAGAAGTGCTGCCAACTGTTCTGAAGTTGTGGATCCTGCTTTCCTCGCGTCAGAAAGGAAAACACATGATGATTTGTTACTGGAAATATGCAGAATATGGCCTTTACATGTGTTGAATAATGTTCACCAATCGGGGGTCAATTGTCTCCATGTTTCGGATATCAAGGGGTCCAGAGATTCTGACTCTGGTTTTCTCTTCTATGTCATAAGCGGGGGTGTTTGGACAGACGGCCATTGGGTGTTTTCTACTGGTCTTGATCAGCGTGTAAGGTGTTGGAGTCTCGAAGAGCTTGGAAAACTAACTGAGCGTGCTCATTTGATCGTTAGTGTACCAGAACCAGAAGCGCTGGACGCAAGAGCTTGCACTGGAAATCATTATCAGATTGCTGTAGCTGGATGTGGGATGCAAATTGTTGAATTCTTTGCCCCTGGAGCAATGGAGAATGGAGAATTAGGTGGCTCGTGA

Network for GWHGAAZE009987

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00400.33	WD40	243	276	4.10E-05

Protein Sequence

>GWHPAAZE009993
MMRESERGRMKSGEYLGEISALCFLHAPPPLLPFLLAGTGSQIILYNVVTGKMISSFQVFQGIRVHGISSTIIDFDSTQPPSSSSSFKVAVFGERRVKLFSLHIDSHSNNQLQVCVDLIPFHSLPKFSHWVLDVRFLKDRVTSSHDGNHCLAIGCSDNTVYFWDILHSIINFEVSCPDRCLLYSMRMWGDQVEALCIASGTIYNEIIVWKVICPVKDCLKPANSFDVDLQHQFQQHEAFHVCRLSGHEGSIFRIAWSSNGSKLLSASDDRCARIWSVNTEREGFDNPTQEVVSHSVGPVLFGHSARLIITVGEDCTCRVWGLDGIQLKMIKEHVGRGVWRCLYDPNSSLLVTAGFDSAIKVHQLDVCLSEGSDRSIEVVEGIDKKEIFTLRIPNSSGHVGLMDSKSEYVRCLQFIREDTFYVATNNGYLFHAKLCDTGEVIWTELVRVNEDAPIVCMNLLSTWPSDLSCCIEDWVAVGDGKGRTTVVSILADAGTPKMGLTYTWSAEKERQLLGTFWCKSLGYRFIFTADPRGTLKLWRLCSHSESVAHISMRSCNATLLAEFVSCFGIRLMCLDALLEEEVLVCGDLRGNLVLFPLLRGLFLGTFISSEAKIDPLSYFKGGHGISCVCSVSIATSGSSQVEIHSTGGDGCICYLEYDKDQRCLEFIGMKQVKELSLIRSVLSDTNFYGELVVQIPCGGWRRPHSYYLGDVPEKKNCFAFVKRGGGSYSGFLVQVGDGLRVREMHSLCFISEDSRVGSTENKFPCIEPSWIATGCEDGTVRLTRYDPGVENWSASKLLGEHVGGSAVRSICSVSKMHIIAAADMPDGIDRKKTTTLVDGENPFLLISVGAKRGHPSLGALSSISFQWLSTDMPTRNCSTRKKGRNVQKTAENCCNENSDSAVSPKSNKNMDSKSSIPGDEYENDWRYLAVTAFLVKVADSRISVCFIVVACSDATVALRALVLPYRLWFDVALFVPLASPVLALQHVIIPEHLLSEDNYPMGGLYIVISGSTDGSIALWDLSENVSTFMRRVSALQFNDCIDGQKRPRTGRGSQGGRWWRSLYSSSVSNKKAGDSSSTLEKKTDDEPSGTSSNSSSHVERSAANCSEVVDPAFLASERKTHDDLLLEICRIWPLHVLNNVHQSGVNCLHVSDIKGSRDSDSGFLFYVISGGVWTDGHWVFSTGLDQRVRCWSLEELGKLTERAHLIVSVPEPEALDARACTGNHYQIAVAGCGMQIVEFFAPGAMENGELGGS

Gene family

Gene family	subfamily
Ubiquitin Family	DWD

KEGG pathway

KO	Enzyme	pathway	mapID
--	--	--	--

Gene Ontology

GO term	Ontology	Name
GO:0005515	molecular_function	protein binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	7.011
	SRR3591706	second leaf	2.005
	SRR3591707	mature leaf	3.441
	SRR3591708	Shoot apex	7.479
	SRR3591709	Stem	5.174
	SRR3591710	White floral bud	3.931
	SRR3591711	White flower	7.728
	SRR3591712	Green floral bud	7.199
	SRR3591713	Yellow flower	3.583
SRP173429	SRR8316895	Juvenile bud stage	5.412
	SRR8316896	Juvenile bud stage	7.266
	SRR8316897	Juvenile bud stage	2.939
	SRR8316894	Third green stage	2.223
	SRR8316900	Third green stage	6.176
	SRR8316901	Third green stage	4.663
	SRR8316898	Complete white stage	0.556
	SRR8316899	Complete white stage	3.901
	SRR8316903	Complete white stage	0.919
	SRR8316902	Silver flowering stage	0.422
	SRR8316904	Silver flowering stage	1.209
	SRR8316905	Silver flowering stage	0.322
	SRR8316906	Gold flowering stage	1.316
	SRR8316907	Gold flowering stage	1.216
	SRR8316908	Gold flowering stage	1.891
SRP132670	SRR6706286	Control	4.462
	SRR6706287	Light intensity 50%	5.091
	SRR6706288	Light intensity 20%	5.235
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.378
	CNS0095593	Slightly white alabastrum(diploid) 2	2.602
	CNS0095594	Slightly white alabastrum(diploid) 3	2.055
	CNS0095595	Whole white alabastrum(diploid) 2	2.883
	CNS0095596	Whole white alabastrum(diploid) 3	2.631
	CNS0095597	Whole white alabastrum(diploid) 4	2.397
	CNS0095598	Silvery flower (diploied) 1	3.077
	CNS0095599	Silvery flower (diploied) 2	3.544
	CNS0095600	Silvery flower (diploied) 3	3.200
	CNS0095601	Golden flower (diploid) 1	2.469
	CNS0095602	Golden flower (diploid) 2	2.821
	CNS0095603	Golden flower (diploid) 3	3.259
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.892
	CNS0095605	Slightly white alabastrum(tetraploid) 2	2.691
	CNS0095606	Slightly white alabastrum(tetraploid) 3	8.608
	CNS0095607	Whole white alabastrum(tetraploid) 1	1.229
	CNS0095608	Whole white alabastrum(tetraploid) 2	1.497
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.856
	CNS0095610	Silvery flower (tetraploid) 1	4.224
	CNS0095611	Silvery flower (tetraploid) 2	4.915
	CNS0095612	Silvery flower (tetraploid) 3	2.206
	CNS0095613	Golden flower (tetraploid) 1	1.387
	CNS0095614	Golden flower (tetraploid) 2	2.972
	CNS0095615	Golden flower (tetraploid) 3	0.638
CRA001975	CRR073297	Stem 1	6.777
	CRR073298	Stem 2	5.966
	CRR073299	Stem 3	5.760
	CRR073300	Leaf 1	5.779
	CRR073301	Leaf 2	4.818
	CRR073302	Leaf 3	3.688
	CRR073303	Juvenile bud 1	4.444
	CRR073304	Juvenile bud 2	2.392
	CRR073305	Juvenile bud 3	4.988
	CRR073306	Third green 1	0.284
	CRR073307	Third green 2	0.069
	CRR073308	Third green 3	0.127
	CRR073309	Second white 1	0.206
	CRR073310	Second white 2	0.417
	CRR073311	Second white 3	0.209
	CRR073312	Silver flowering 1	0.077
	CRR073313	Silver flowering 2	0.367
	CRR073314	Silver flowering 3	0.097
	CRR073315	Gold flowering 1	1.271
	CRR073316	Gold flowering 2	3.349
	CRR073317	Gold flowering 3	2.542
	CRR073318	Tawny withering 1	3.155
	CRR073319	Tawny withering 2	3.712
	CRR073320	Tawny withering 3	3.314