Gene detail

Detail information of GWHGAAZE009989

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_009627394.1	0	PREDICTED: pectinesterase-like [Nicotiana tomentosiformis]
Swissprot	tr\|O80722\|PME4_ARATH	6E-147	Pectinesterase 4 (Precursor)
trEMBL	tr\|M1C831\|M1C831_SOLTU	0	Pectinesterase {ECO:0000256\|RuleBase:RU000589}
TAIR10	AT2G47030.1	6E-116	Plant invertase/pectin methylesterase inhibitor superfamily

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	121518987	121520861	-
GWHAAZE00000002	mRNA	121518987	121520861	-
GWHAAZE00000002	exon	121518987	121519681	-
GWHAAZE00000002	exon	121519823	121520861	-
GWHAAZE00000002	CDS	121519823	121520861	-
GWHAAZE00000002	CDS	121518987	121519681	-

Transcript Sequence
>GWHTAAZE010001 ATGGCGGCAGGAAAAATAGTAGTTTCATTGGTATCCCTTTTACTAGTAGTTGGGGTGGTGTGTGGGGTAATAGCGGTAGTAAACAATCACGAGGAAGAAAAGAAGGATGATAAGGTATCAACGTCAATGAAGGCTGTTACCACCATCTGCGAACCCACGGAATTCAAGGATGCTTGTGTCAGGAGCCTTCAAACTGCTGCAAAGAATGAAAGTGCTAACCTCAAGGACTTCGTCTTGGCTGCCATTGATGCCACCACTGAAGAGCTCAAGAAAGCTCTTGACGTTGCCAGCAAGCAATCCATCAACAAGGAAAAAGATCCTTACGACCACATGGGCATTGAGGATTGCAAGCAATTACTGGAGGAAGGGGTAGACAACCTTCAGGCCTCATTCTCCATGGTGGGAGAGAGCGAATTGCACACCCTTAACGATCGGGTGAGGGAACTTCTCAACTGGATCTATGCTGTTTATAGTTTCGAAATGCAATGTGTTGACTACGTGGAGAAGCCTGAGTACAAGTCTGCCATACAGGACGGCTTGGTTAATGCAACTCAGCTTACTAGCAATGCATTGACCATTGTTTACAAGATTGGGGAATACCTCAAGGCTTTCAACGTCAAAGGTGTGGTGGAAAATCTAGATAAACTAAAAGAAGATGCTAATGCTAGTGCTACCAATAGTAATAATCATCGACGCCTTCTTGAGGCCAATGAGATTGGTCCAGATGGATACCCTAACTGGCTTTCTGCCAACGATCGCAAGCTCTTACAGAAGCCTATAGTGGGACCCAATGCAGTGGTTGCCAAGGATGGAAGCGGGCAGTTCAAGACCATTGGGGCTGCCATTAATGCATACCCAAAGAAACACCAGGGGAGATACACCATCTACGTTAAGGCCGGTATTTATAATGAGATTGTTAGAATTACTAATAAGCAACCAAACATATACATTTACGGAGATGGAGTTGGTAAGACCATTATTACTGGAAAGCAGAACTTTGGATTAATGAAGGTCAACACTATGAATACTGCAACGTTTGCATGTGATGCCCCGGGGTTCATTGCAAGAGGACTCACTTTCCAAAACACAGCAGGACCAGAAGGCCATCAAGCAGTGGCTCTACGATTGAAAGGAGATATGTCAGCTGTGTTCGACTGCAACATAGAAGGTTACCAAGACACATTGTACTACCATCAATACCGTCAGTTCTACCGCAACTGTGTTATATCAGGGACCATAGACTTCTTGTTTGGGGAAGGAGCAGTGGTGATCCAAAACAGCCTGATCATAGTGAGGAGGCCCGGCCTAAATCAAAACATCAATACAGTGACGGCAGATGGGAGGCAACGGAAGGAGTCTGTGAGCGGACTAGTCCTCCAGAACTGTAGGATCGTGCCGGAGAGGGAATTGTTTGCTGACAGGTTCAGGGTGTCCACCTACCTGGGCCGGCCCTGGAAGATGTTCGCAAACACCATCGTAATGCAAAGCGAGTTGGGTGATTTCATAAGGCCAGAGGGCTACCTGCCTTGGGATGGACAGAACTACGACAAGACATGCAACTACCTAGAATTTGCAAACAGGGGGCCTGGTGCCTTTTTTGGCAGAAGGGTGAGGTGGAATGGAGTACGCCTCATGATGGACCCCCGAGAGGCTGCTCAATACACGCCGAATCCTTTCCTTGTCGGATCCACCTGGTTGCCTCAAACTGGAGCGCCTTTTCAACTTGGCTTGTAA

Network for GWHGAAZE009989

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF04043.16	PMEI	45	193	2.30E-17
PF01095.20	Pectinesterase	264	562	3.00E-117

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01051	E3.1.1.11	Metabolic pathways	map01100
		Pentose and glucuronate interconversions	map00040
		Two-component system	map02020

Gene Ontology

GO term	Ontology	Name
GO:0042545	biological_process	cell wall modification
GO:0004857	molecular_function	enzyme inhibitor activity
GO:0030599	molecular_function	pectinesterase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.350
	SRR3591706	second leaf	0.026
	SRR3591707	mature leaf	0.047
	SRR3591708	Shoot apex	0.975
	SRR3591709	Stem	2.697
	SRR3591710	White floral bud	563.718
	SRR3591711	White flower	29.861
	SRR3591712	Green floral bud	397.694
	SRR3591713	Yellow flower	16.593
SRP173429	SRR8316895	Juvenile bud stage	5.094
	SRR8316896	Juvenile bud stage	48.177
	SRR8316897	Juvenile bud stage	33.046
	SRR8316894	Third green stage	46.972
	SRR8316900	Third green stage	341.356
	SRR8316901	Third green stage	392.179
	SRR8316898	Complete white stage	0.134
	SRR8316899	Complete white stage	1.674
	SRR8316903	Complete white stage	1.140
	SRR8316902	Silver flowering stage	5.970
	SRR8316904	Silver flowering stage	12.034
	SRR8316905	Silver flowering stage	4.230
	SRR8316906	Gold flowering stage	1.394
	SRR8316907	Gold flowering stage	0.922
	SRR8316908	Gold flowering stage	0.790
SRP132670	SRR6706286	Control	222.855
	SRR6706287	Light intensity 50%	218.463
	SRR6706288	Light intensity 20%	202.989
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	178.633
	CNS0095593	Slightly white alabastrum(diploid) 2	142.100
	CNS0095594	Slightly white alabastrum(diploid) 3	138.518
	CNS0095595	Whole white alabastrum(diploid) 2	928.516
	CNS0095596	Whole white alabastrum(diploid) 3	1050.585
	CNS0095597	Whole white alabastrum(diploid) 4	1336.667
	CNS0095598	Silvery flower (diploied) 1	34.606
	CNS0095599	Silvery flower (diploied) 2	116.186
	CNS0095600	Silvery flower (diploied) 3	16.732
	CNS0095601	Golden flower (diploid) 1	36.782
	CNS0095602	Golden flower (diploid) 2	13.228
	CNS0095603	Golden flower (diploid) 3	14.160
	CNS0095604	Slightly white alabastrum(tetraploid) 1	447.858
	CNS0095605	Slightly white alabastrum(tetraploid) 2	486.946
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.970
	CNS0095607	Whole white alabastrum(tetraploid) 1	1334.252
	CNS0095608	Whole white alabastrum(tetraploid) 2	1520.475
	CNS0095609	Whole white alabastrum(tetraploid) 3	655.083
	CNS0095610	Silvery flower (tetraploid) 1	14.770
	CNS0095611	Silvery flower (tetraploid) 2	61.827
	CNS0095612	Silvery flower (tetraploid) 3	181.049
	CNS0095613	Golden flower (tetraploid) 1	24.688
	CNS0095614	Golden flower (tetraploid) 2	6.065
	CNS0095615	Golden flower (tetraploid) 3	58.621
CRA001975	CRR073297	Stem 1	51.161
	CRR073298	Stem 2	51.241
	CRR073299	Stem 3	16.381
	CRR073300	Leaf 1	351.785
	CRR073301	Leaf 2	207.197
	CRR073302	Leaf 3	98.912
	CRR073303	Juvenile bud 1	279.036
	CRR073304	Juvenile bud 2	157.307
	CRR073305	Juvenile bud 3	23.687
	CRR073306	Third green 1	112.760
	CRR073307	Third green 2	108.717
	CRR073308	Third green 3	113.009
	CRR073309	Second white 1	3.647
	CRR073310	Second white 2	22.844
	CRR073311	Second white 3	27.665
	CRR073312	Silver flowering 1	125.858
	CRR073313	Silver flowering 2	141.540
	CRR073314	Silver flowering 3	72.589
	CRR073315	Gold flowering 1	81.719
	CRR073316	Gold flowering 2	27.641
	CRR073317	Gold flowering 3	12.286
	CRR073318	Tawny withering 1	130.160
	CRR073319	Tawny withering 2	120.402
	CRR073320	Tawny withering 3	97.722