Detail information of GWHGAAZE010015


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_002271734.10PREDICTED: LEC14B protein isoform X1 [Vitis vinifera]
Swissprottr|Q40153|LE14B_LITER0LEC14B protein
trEMBLtr|F6HQ37|F6HQ37_VITVI0Putative uncharacterized protein {ECO:0000313|EMBL:CCB56793.1}
TAIR10AT4G03020.20transducin family protein / WD-40 repeat family protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene122062385122067708-
GWHAAZE00000002mRNA122062385122067708-
GWHAAZE00000002exon122062385122062570-
GWHAAZE00000002exon122062839122062899-
GWHAAZE00000002exon122063464122063622-
GWHAAZE00000002exon122064009122064184-
GWHAAZE00000002exon122064632122064709-
GWHAAZE00000002exon122065144122065320-
GWHAAZE00000002exon122065627122065704-
GWHAAZE00000002exon122066831122066950-
GWHAAZE00000002exon122067253122067708-
GWHAAZE00000002CDS122067253122067708-
GWHAAZE00000002CDS122066831122066950-
GWHAAZE00000002CDS122065627122065704-
GWHAAZE00000002CDS122065144122065320-
GWHAAZE00000002CDS122064632122064709-
GWHAAZE00000002CDS122064009122064184-
GWHAAZE00000002CDS122063464122063622-
GWHAAZE00000002CDS122062839122062899-
GWHAAZE00000002CDS122062385122062570-
Transcript Sequence

Network for GWHGAAZE010015

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00400.33WD402362630.033
PF00400.33WD402713060.00019
PF00400.33WD403153520.0037
PF00400.33WD403914340.13
PF00400.33WD404424750.00072
Protein Sequence

Gene family

Gene familysubfamily
Ubiquitin FamilyDWD

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName
GO:0005515molecular_functionprotein binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf17.188
SRR3591706second leaf15.144
SRR3591707mature leaf21.551
SRR3591708Shoot apex15.222
SRR3591709Stem28.090
SRR3591710White floral bud40.117
SRR3591711White flower48.775
SRR3591712Green floral bud13.230
SRR3591713Yellow flower43.421
SRP173429 SRR8316895Juvenile bud stage 13.825
SRR8316896Juvenile bud stage 22.781
SRR8316897Juvenile bud stage 10.431
SRR8316894Third green stage 9.125
SRR8316900Third green stage 21.207
SRR8316901Third green stage 28.345
SRR8316898Complete white stage 25.570
SRR8316899Complete white stage 47.804
SRR8316903Complete white stage 31.448
SRR8316902Silver flowering stage23.260
SRR8316904Silver flowering stage34.949
SRR8316905Silver flowering stage16.979
SRR8316906Gold flowering stage 51.620
SRR8316907Gold flowering stage 57.671
SRR8316908Gold flowering stage 51.216
SRP132670SRR6706286Control27.036
SRR6706287Light intensity 50%20.208
SRR6706288Light intensity 20%26.032
CNP0000432CNS0095592Slightly white alabastrum(diploid) 114.954
CNS0095593Slightly white alabastrum(diploid) 217.296
CNS0095594Slightly white alabastrum(diploid) 318.282
CNS0095595Whole white alabastrum(diploid) 216.737
CNS0095596Whole white alabastrum(diploid) 312.085
CNS0095597Whole white alabastrum(diploid) 417.374
CNS0095598Silvery flower (diploied) 128.010
CNS0095599Silvery flower (diploied) 228.642
CNS0095600Silvery flower (diploied) 345.926
CNS0095601Golden flower (diploid) 126.198
CNS0095602Golden flower (diploid) 226.667
CNS0095603Golden flower (diploid) 326.095
CNS0095604Slightly white alabastrum(tetraploid) 117.365
CNS0095605Slightly white alabastrum(tetraploid) 211.997
CNS0095606Slightly white alabastrum(tetraploid) 321.912
CNS0095607Whole white alabastrum(tetraploid) 19.314
CNS0095608Whole white alabastrum(tetraploid) 210.571
CNS0095609Whole white alabastrum(tetraploid) 322.393
CNS0095610Silvery flower (tetraploid) 155.399
CNS0095611Silvery flower (tetraploid) 255.923
CNS0095612Silvery flower (tetraploid) 354.393
CNS0095613Golden flower (tetraploid) 127.225
CNS0095614Golden flower (tetraploid) 236.766
CNS0095615Golden flower (tetraploid) 321.692
CRA001975CRR073297Stem 120.754
CRR073298Stem 216.732
CRR073299Stem 315.849
CRR073300Leaf 123.318
CRR073301Leaf 221.382
CRR073302Leaf 314.010
CRR073303Juvenile bud 126.435
CRR073304Juvenile bud 219.050
CRR073305Juvenile bud 332.750
CRR073306Third green 165.777
CRR073307Third green 239.036
CRR073308Third green 345.134
CRR073309Second white 146.685
CRR073310Second white 256.236
CRR073311Second white 336.976
CRR073312Silver flowering 133.613
CRR073313Silver flowering 233.939
CRR073314Silver flowering 323.161
CRR073315Gold flowering 120.176
CRR073316Gold flowering 225.415
CRR073317Gold flowering 321.974
CRR073318Tawny withering 119.930
CRR073319Tawny withering 218.119
CRR073320Tawny withering 317.243