Detail information of GWHGAAZE010019


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrYP_002608370.10ribosomal protein S3 [Vitis vinifera]
Swissprottr|Q04716|RT03_PETHY0Ribosomal protein S3, mitochondrial
trEMBLtr|B6VJV8|B6VJV8_VITVI0Ribosomal protein S3 {ECO:0000313|EMBL:CAQ77614.1}
TAIR10ATMG00090.10structural constituent of ribosome;protein binding

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene122122604122124202+
GWHAAZE00000002mRNA122122604122124202+
GWHAAZE00000002exon122122604122123103+
GWHAAZE00000002exon122123164122124202+
GWHAAZE00000002CDS122122604122123103+
GWHAAZE00000002CDS122123164122124202+
Transcript Sequence

Network for GWHGAAZE010019

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00189.21Ribosomal_S3_C4194951.40E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02982RP-S3, rpsC Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.122
SRR3591706second leaf0.083
SRR3591707mature leaf0.164
SRR3591708Shoot apex0.840
SRR3591709Stem0.000
SRR3591710White floral bud0.167
SRR3591711White flower0.156
SRR3591712Green floral bud0.172
SRR3591713Yellow flower0.247
SRP173429 SRR8316895Juvenile bud stage 5.594
SRR8316896Juvenile bud stage 4.039
SRR8316897Juvenile bud stage 10.081
SRR8316894Third green stage 13.166
SRR8316900Third green stage 1.517
SRR8316901Third green stage 0.957
SRR8316898Complete white stage 3.976
SRR8316899Complete white stage 0.305
SRR8316903Complete white stage 5.500
SRR8316902Silver flowering stage8.394
SRR8316904Silver flowering stage8.736
SRR8316905Silver flowering stage8.762
SRR8316906Gold flowering stage 0.415
SRR8316907Gold flowering stage 0.321
SRR8316908Gold flowering stage 0.401
SRP132670SRR6706286Control0.607
SRR6706287Light intensity 50%0.756
SRR6706288Light intensity 20%0.677
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.323
CNS0095593Slightly white alabastrum(diploid) 24.612
CNS0095594Slightly white alabastrum(diploid) 34.701
CNS0095595Whole white alabastrum(diploid) 26.671
CNS0095596Whole white alabastrum(diploid) 35.571
CNS0095597Whole white alabastrum(diploid) 48.580
CNS0095598Silvery flower (diploied) 15.427
CNS0095599Silvery flower (diploied) 24.643
CNS0095600Silvery flower (diploied) 33.884
CNS0095601Golden flower (diploid) 14.576
CNS0095602Golden flower (diploid) 23.507
CNS0095603Golden flower (diploid) 33.512
CNS0095604Slightly white alabastrum(tetraploid) 15.771
CNS0095605Slightly white alabastrum(tetraploid) 23.347
CNS0095606Slightly white alabastrum(tetraploid) 32.881
CNS0095607Whole white alabastrum(tetraploid) 16.127
CNS0095608Whole white alabastrum(tetraploid) 26.440
CNS0095609Whole white alabastrum(tetraploid) 33.920
CNS0095610Silvery flower (tetraploid) 12.571
CNS0095611Silvery flower (tetraploid) 24.138
CNS0095612Silvery flower (tetraploid) 32.607
CNS0095613Golden flower (tetraploid) 17.006
CNS0095614Golden flower (tetraploid) 24.055
CNS0095615Golden flower (tetraploid) 33.009
CRA001975CRR073297Stem 12.857
CRR073298Stem 23.036
CRR073299Stem 30.581
CRR073300Leaf 11.818
CRR073301Leaf 22.152
CRR073302Leaf 31.334
CRR073303Juvenile bud 13.633
CRR073304Juvenile bud 21.736
CRR073305Juvenile bud 35.981
CRR073306Third green 12.573
CRR073307Third green 20.885
CRR073308Third green 33.068
CRR073309Second white 12.140
CRR073310Second white 27.575
CRR073311Second white 327.386
CRR073312Silver flowering 121.350
CRR073313Silver flowering 25.069
CRR073314Silver flowering 38.894
CRR073315Gold flowering 11.692
CRR073316Gold flowering 21.356
CRR073317Gold flowering 32.382
CRR073318Tawny withering 12.783
CRR073319Tawny withering 22.440
CRR073320Tawny withering 30.993