Gene detail

Detail information of GWHGAAZE010020

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	YP_008999574.1	7.91475E-75	NADH dehydrogenase subunit 3 (mitochondrion) (mitochondrion) [Helianthus annuus]
Swissprot	tr\|P27062\|NU3M_PANGI	5E-75	NADH-ubiquinone oxidoreductase chain 3
trEMBL	tr\|Q96030\|Q96030_HELAN	3E-75	NADH-ubiquinone oxidoreductase chain 3 {ECO:0000256\|RuleBase:RU003640, ECO:0000256\|SAAS:SAAS00136968}
TAIR10	ATMG00990.1	1E-48	NADH dehydrogenase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	122126361	122129239	-
GWHAAZE00000002	mRNA	122126361	122129239	-
GWHAAZE00000002	exon	122126361	122126749	-
GWHAAZE00000002	exon	122126939	122127263	-
GWHAAZE00000002	exon	122127345	122127390	-
GWHAAZE00000002	exon	122128237	122128324	-
GWHAAZE00000002	exon	122129035	122129239	-
GWHAAZE00000002	CDS	122129035	122129239	-
GWHAAZE00000002	CDS	122128237	122128324	-
GWHAAZE00000002	CDS	122127345	122127390	-
GWHAAZE00000002	CDS	122126939	122127263	-
GWHAAZE00000002	CDS	122126361	122126749	-

Transcript Sequence
>GWHTAAZE010032 ATGCATGCTACGAAAGATAGGGTCGAGTCTGATACATCAACCGTCTACTCAATATCCTTGTACGAGTCCACAATCACTACACGAGATGAACCTTGGTTTGGTGAATTGAAGTTGACCTTAGGTGTAATAGGACTCCCAGTTACTGCGCGCGATCGTATACTGAGGTGCTCCCCGCCGGTTGTTGGAACGACGCGAGCCGGGCCGGGGGGAGAGTGGAGCCTCGAGAATGTTGAGAGGAAGATCCTTGGCCCCTCTTCATTCTCTACAGGGTTCCAAACCTTTCTTCAACATAGTCTTTCGGGACACGAAGGCTATTTTCCGTTTCATTTCCGCACTACCGGCGCCTTTGCGCTCGGCTATGTGTTTATGGACGACCTTGGTCGTGCTGTTTCGCAGTTTTACCCCTTTCTCAGGAGGAATGTCAGGGGTCAAGTACGCCCCTGTTCCTTCTGGGGATTCTCTCTCGTACCTATAACCGAGGATCAGCCCGGTCCTTCAGCTTCCGACAGACTCAATAACCGTATTGAACAGTTGCGAAAAGATCCCATCTTTGAGGTCTCATATAGGAATCGGGTCATAACGGAGGAAAAAATTTGTCACATTGCAGCGGAGCTTGTCGACGAGCTCGGGGAAGAAATAGCGGACCCCGAGGATATCCGAAAAGCAAGGAGCGAGAGAACAAAGTTGGATGTGGTGATGTCAGAATTTGCACCTATTTGTATCTATTTAGTGATCAGTCCGCTAGTTTCTTTGATCCCACTCGGTGTTCCTTTTCCATTTTCTTCCAATAGTTCGACCTATCCAGAAAAATTGTCGGCCTACGAATGTGGTTTCGATCCTTCCGGTGATGCCAGAAGTCGTTTTGATATACGATTTTATCTTGTTTCCATTTTATTTATTATCCCTGATCCGGAAGTCACCTTTTCCTTTCCTTGGGCAGTACCTCTCAACAAGATTGATCCGTTTGGATCTTGGTCGATGATGGCCTTTTTATTGATTTTGACGATTGGATCTCTCTATGAATGGAAAAGGGGTGCTTCGGATCGGGAGTAA

Network for GWHGAAZE010020

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0034

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00507.20	Oxidored_q4	263	346	5.10E-27

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03880	ND3	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Retrograde endocannabinoid signaling	map04723
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.418
	SRR3591706	second leaf	0.569
	SRR3591707	mature leaf	0.329
	SRR3591708	Shoot apex	1.771
	SRR3591709	Stem	0.484
	SRR3591710	White floral bud	0.664
	SRR3591711	White flower	0.561
	SRR3591712	Green floral bud	1.450
	SRR3591713	Yellow flower	1.173
SRP173429	SRR8316895	Juvenile bud stage	3.094
	SRR8316896	Juvenile bud stage	3.395
	SRR8316897	Juvenile bud stage	3.815
	SRR8316894	Third green stage	4.965
	SRR8316900	Third green stage	2.517
	SRR8316901	Third green stage	2.545
	SRR8316898	Complete white stage	1.806
	SRR8316899	Complete white stage	2.754
	SRR8316903	Complete white stage	1.861
	SRR8316902	Silver flowering stage	2.690
	SRR8316904	Silver flowering stage	3.005
	SRR8316905	Silver flowering stage	2.086
	SRR8316906	Gold flowering stage	0.630
	SRR8316907	Gold flowering stage	0.698
	SRR8316908	Gold flowering stage	1.264
SRP132670	SRR6706286	Control	1.568
	SRR6706287	Light intensity 50%	1.549
	SRR6706288	Light intensity 20%	1.508
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	7.062
	CNS0095593	Slightly white alabastrum(diploid) 2	6.708
	CNS0095594	Slightly white alabastrum(diploid) 3	8.973
	CNS0095595	Whole white alabastrum(diploid) 2	5.159
	CNS0095596	Whole white alabastrum(diploid) 3	5.982
	CNS0095597	Whole white alabastrum(diploid) 4	7.447
	CNS0095598	Silvery flower (diploied) 1	2.409
	CNS0095599	Silvery flower (diploied) 2	2.634
	CNS0095600	Silvery flower (diploied) 3	1.473
	CNS0095601	Golden flower (diploid) 1	2.180
	CNS0095602	Golden flower (diploid) 2	1.292
	CNS0095603	Golden flower (diploid) 3	1.780
	CNS0095604	Slightly white alabastrum(tetraploid) 1	5.713
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.918
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.482
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.468
	CNS0095608	Whole white alabastrum(tetraploid) 2	6.316
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.455
	CNS0095610	Silvery flower (tetraploid) 1	0.844
	CNS0095611	Silvery flower (tetraploid) 2	1.083
	CNS0095612	Silvery flower (tetraploid) 3	1.440
	CNS0095613	Golden flower (tetraploid) 1	2.804
	CNS0095614	Golden flower (tetraploid) 2	1.305
	CNS0095615	Golden flower (tetraploid) 3	1.083
CRA001975	CRR073297	Stem 1	3.029
	CRR073298	Stem 2	3.522
	CRR073299	Stem 3	1.459
	CRR073300	Leaf 1	2.160
	CRR073301	Leaf 2	2.883
	CRR073302	Leaf 3	2.165
	CRR073303	Juvenile bud 1	2.222
	CRR073304	Juvenile bud 2	1.364
	CRR073305	Juvenile bud 3	2.852
	CRR073306	Third green 1	2.060
	CRR073307	Third green 2	1.829
	CRR073308	Third green 3	1.392
	CRR073309	Second white 1	2.398
	CRR073310	Second white 2	0.848
	CRR073311	Second white 3	2.561
	CRR073312	Silver flowering 1	1.172
	CRR073313	Silver flowering 2	2.357
	CRR073314	Silver flowering 3	0.824
	CRR073315	Gold flowering 1	1.232
	CRR073316	Gold flowering 2	1.412
	CRR073317	Gold flowering 3	1.532
	CRR073318	Tawny withering 1	1.348
	CRR073319	Tawny withering 2	2.856
	CRR073320	Tawny withering 3	1.330