Gene detail

Detail information of GWHGAAZE010024

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	YP_009091707.1	0	apocytochrome b (mitochondrion) [Panax ginseng]
Swissprot	tr\|P05718\|CYB_VICFA	0	Cytochrome b
trEMBL	tr\|A0A096XF77\|A0A096XF77_PANGI	0	Apocytochrome b {ECO:0000313\|EMBL:AHJ80996.1}
TAIR10	ATMG00220.1	1E-180	apocytochrome b

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	122146262	122147272	+
GWHAAZE00000002	mRNA	122146262	122147272	+
GWHAAZE00000002	exon	122146262	122147272	+
GWHAAZE00000002	CDS	122146262	122147272	+

Transcript Sequence
>GWHTAAZE010036 ATGCATCACACACCTCATGTGGATCTAGCTTTCAACAGCGTAGAACACATTATGAGAGATGTTGAAGGGGGCTGGTTGCTCCGTTATATGCATGCTAATGGGGCAAGTATGTTTCTCATTGTGGTTCACCTTCATATTTTTCGTGGTCTATATCATGCGAGTTATAGCAGTCCTAGGGAATTTGTTCGGTGTGTCGGAGTTGTAATCTTCCTATTAATGATTGTGACAGCTTTTATAGGATACGTACCACCTTGGGGTCAGATGAGTTTTTGGGGAGCTACAGTAATTACAAGCTTAGCTAGCGCCATACCTGTAGTAGGAGATACCATAGTGACTTGGCTTTGGGGTGGTTTCTCCGTGGACAATGCTACCTTAAATCGTTTTTTTAGTCTTCATCATTTACTCCCCTTTATTTTAGTAGGCGCCAGTCTTCTTCATCTGGCCGCATTGCATCAATATGGATCAAATAATCCATTGGGTGTACATTCAGAGATGGATAAAATTGCTTCTTACCCTTATTTTTATGTAAAGGATCTAGTAGGTTGGGTAGCTTCTGCTATCTTTTTTTCCATTTTTCTTTTTTATGCTCCTAATGTTTTGGGGCATCCCGACAATTATATACCTGCTAATCCGATGCCCACCCCGCCTCATATTGTGCCGGAATGGTATTTCCTACCGATCCATGCCATTCTTCGTAGTATACCTGACAAAGCGGGAGGTGTAGCCGCAATAGCACCAGTTTTTATATGTCTGTTGGCTTTACCTTTTTTTAAAAGTATGTATGTACGTAGTTCAAGTTTTCGCCCGATTCACCAAGGAATCTTTTGGTTGCTTTTGGCGGATCGCTTACTACTAGGTTGGATCGGATGTCAACCTGTAGAGGCACCATTTGTTACTATTGGACAAATTTCTCCTGTAGTTTTCTTCTTGTTCTTTGCCATAACGCCCATTCCGGGACGAGTTGGAAGAGGAATTCCTAATTCTTACACGGATGAGACTGATCACACCTGA

Network for GWHGAAZE010024

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00033.20	Cytochrome_B	1	154	4.60E-64
PF00032.18	Cytochrom_B_C	208	309	1.60E-30

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K00412	CYTB, petB	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Two-component system	map02020
		Cardiac muscle contraction	map04260
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0022904	biological_process	respiratory electron transport chain
GO:0006122	biological_process	mitochondrial electron transport, ubiquinol to cytochrome c
GO:0016020	cellular_component	membrane
GO:0045275	cellular_component	respiratory chain complex III
GO:0009055	molecular_function	electron transfer activity
GO:0016491	molecular_function	oxidoreductase activity
GO:0008121	molecular_function	ubiquinol-cytochrome-c reductase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.180
	SRR3591707	mature leaf	0.065
	SRR3591708	Shoot apex	1.709
	SRR3591709	Stem	0.126
	SRR3591710	White floral bud	0.515
	SRR3591711	White flower	0.473
	SRR3591712	Green floral bud	0.593
	SRR3591713	Yellow flower	0.374
SRP173429	SRR8316895	Juvenile bud stage	15.025
	SRR8316896	Juvenile bud stage	9.350
	SRR8316897	Juvenile bud stage	31.078
	SRR8316894	Third green stage	38.266
	SRR8316900	Third green stage	3.359
	SRR8316901	Third green stage	1.842
	SRR8316898	Complete white stage	15.456
	SRR8316899	Complete white stage	0.830
	SRR8316903	Complete white stage	19.716
	SRR8316902	Silver flowering stage	26.876
	SRR8316904	Silver flowering stage	28.830
	SRR8316905	Silver flowering stage	24.620
	SRR8316906	Gold flowering stage	0.313
	SRR8316907	Gold flowering stage	0.517
	SRR8316908	Gold flowering stage	0.271
SRP132670	SRR6706286	Control	0.684
	SRR6706287	Light intensity 50%	1.411
	SRR6706288	Light intensity 20%	0.850
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	18.674
	CNS0095593	Slightly white alabastrum(diploid) 2	10.393
	CNS0095594	Slightly white alabastrum(diploid) 3	15.576
	CNS0095595	Whole white alabastrum(diploid) 2	21.899
	CNS0095596	Whole white alabastrum(diploid) 3	13.846
	CNS0095597	Whole white alabastrum(diploid) 4	25.092
	CNS0095598	Silvery flower (diploied) 1	13.669
	CNS0095599	Silvery flower (diploied) 2	18.245
	CNS0095600	Silvery flower (diploied) 3	7.770
	CNS0095601	Golden flower (diploid) 1	15.598
	CNS0095602	Golden flower (diploid) 2	3.775
	CNS0095603	Golden flower (diploid) 3	6.206
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.894
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.675
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.796
	CNS0095607	Whole white alabastrum(tetraploid) 1	18.268
	CNS0095608	Whole white alabastrum(tetraploid) 2	25.319
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.815
	CNS0095610	Silvery flower (tetraploid) 1	4.095
	CNS0095611	Silvery flower (tetraploid) 2	4.747
	CNS0095612	Silvery flower (tetraploid) 3	3.138
	CNS0095613	Golden flower (tetraploid) 1	27.040
	CNS0095614	Golden flower (tetraploid) 2	7.372
	CNS0095615	Golden flower (tetraploid) 3	3.041
CRA001975	CRR073297	Stem 1	2.616
	CRR073298	Stem 2	2.073
	CRR073299	Stem 3	0.525
	CRR073300	Leaf 1	1.264
	CRR073301	Leaf 2	0.837
	CRR073302	Leaf 3	0.755
	CRR073303	Juvenile bud 1	1.366
	CRR073304	Juvenile bud 2	0.633
	CRR073305	Juvenile bud 3	3.329
	CRR073306	Third green 1	1.555
	CRR073307	Third green 2	1.145
	CRR073308	Third green 3	1.748
	CRR073309	Second white 1	2.836
	CRR073310	Second white 2	6.740
	CRR073311	Second white 3	21.198
	CRR073312	Silver flowering 1	13.342
	CRR073313	Silver flowering 2	4.921
	CRR073314	Silver flowering 3	7.242
	CRR073315	Gold flowering 1	1.235
	CRR073316	Gold flowering 2	1.704
	CRR073317	Gold flowering 3	1.963
	CRR073318	Tawny withering 1	1.764
	CRR073319	Tawny withering 2	1.465
	CRR073320	Tawny withering 3	1.021