Detail information of GWHGAAZE010031


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrYP_009091722.14.2073E-120orf175 (mitochondrion) [Panax ginseng]
Swissprottr|Q04050|NU4M_BRACM9E-96NADH-ubiquinone oxidoreductase chain 4
trEMBLtr|A0A096XFA7|A0A096XFA7_PANGI2E-120Orf175 {ECO:0000313|EMBL:AHJ81038.1}
TAIR10ATMG00580.13E-78NADH dehydrogenase subunit 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene122360689122361216+
GWHAAZE00000002mRNA122360689122361216+
GWHAAZE00000002exon122360689122361216+
GWHAAZE00000002CDS122360689122361216+
Transcript Sequence

Network for GWHGAAZE010031

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03881ND4 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.660
SRR3591707mature leaf0.210
SRR3591708Shoot apex0.900
SRR3591709Stem0.250
SRR3591710White floral bud0.337
SRR3591711White flower0.115
SRR3591712Green floral bud0.324
SRR3591713Yellow flower0.074
SRP173429 SRR8316895Juvenile bud stage 9.126
SRR8316896Juvenile bud stage 4.401
SRR8316897Juvenile bud stage 20.736
SRR8316894Third green stage 22.467
SRR8316900Third green stage 2.529
SRR8316901Third green stage 0.744
SRR8316898Complete white stage 4.846
SRR8316899Complete white stage 0.703
SRR8316903Complete white stage 5.401
SRR8316902Silver flowering stage7.437
SRR8316904Silver flowering stage9.358
SRR8316905Silver flowering stage8.805
SRR8316906Gold flowering stage 0.335
SRR8316907Gold flowering stage 0.470
SRR8316908Gold flowering stage 0.072
SRP132670SRR6706286Control0.247
SRR6706287Light intensity 50%0.251
SRR6706288Light intensity 20%0.344
CNP0000432CNS0095592Slightly white alabastrum(diploid) 16.589
CNS0095593Slightly white alabastrum(diploid) 25.510
CNS0095594Slightly white alabastrum(diploid) 36.667
CNS0095595Whole white alabastrum(diploid) 26.938
CNS0095596Whole white alabastrum(diploid) 34.891
CNS0095597Whole white alabastrum(diploid) 47.117
CNS0095598Silvery flower (diploied) 14.498
CNS0095599Silvery flower (diploied) 24.072
CNS0095600Silvery flower (diploied) 32.257
CNS0095601Golden flower (diploid) 14.129
CNS0095602Golden flower (diploid) 21.154
CNS0095603Golden flower (diploid) 32.434
CNS0095604Slightly white alabastrum(tetraploid) 14.589
CNS0095605Slightly white alabastrum(tetraploid) 26.285
CNS0095606Slightly white alabastrum(tetraploid) 32.184
CNS0095607Whole white alabastrum(tetraploid) 15.931
CNS0095608Whole white alabastrum(tetraploid) 27.724
CNS0095609Whole white alabastrum(tetraploid) 32.626
CNS0095610Silvery flower (tetraploid) 11.342
CNS0095611Silvery flower (tetraploid) 22.102
CNS0095612Silvery flower (tetraploid) 31.046
CNS0095613Golden flower (tetraploid) 15.384
CNS0095614Golden flower (tetraploid) 23.342
CNS0095615Golden flower (tetraploid) 31.260
CRA001975CRR073297Stem 11.669
CRR073298Stem 21.761
CRR073299Stem 30.105
CRR073300Leaf 11.047
CRR073301Leaf 20.629
CRR073302Leaf 30.560
CRR073303Juvenile bud 11.158
CRR073304Juvenile bud 20.452
CRR073305Juvenile bud 31.084
CRR073306Third green 10.367
CRR073307Third green 20.038
CRR073308Third green 30.383
CRR073309Second white 11.546
CRR073310Second white 22.411
CRR073311Second white 34.522
CRR073312Silver flowering 13.811
CRR073313Silver flowering 21.739
CRR073314Silver flowering 32.330
CRR073315Gold flowering 10.405
CRR073316Gold flowering 20.542
CRR073317Gold flowering 31.036
CRR073318Tawny withering 10.864
CRR073319Tawny withering 20.872
CRR073320Tawny withering 30.356