Gene detail

Detail information of GWHGAAZE010032

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003588268.1	1.5137E-118	NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
Swissprot	tr\|Q04050\|NU4M_BRACM	2E-104	NADH-ubiquinone oxidoreductase chain 4
trEMBL	tr\|A0A072TTK3\|A0A072TTK3_MEDTR	6E-119	NADH-quinone oxidoreductase protein {ECO:0000313\|EMBL:KEH16850.1}
TAIR10	ATMG00580.1	8E-68	NADH dehydrogenase subunit 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	122361490	122363514	+
GWHAAZE00000002	mRNA	122361490	122363514	+
GWHAAZE00000002	exon	122361490	122361598	+
GWHAAZE00000002	exon	122362507	122363150	+
GWHAAZE00000002	exon	122363269	122363514	+
GWHAAZE00000002	CDS	122361490	122361598	+
GWHAAZE00000002	CDS	122362507	122363150	+
GWHAAZE00000002	CDS	122363269	122363514	+

Transcript Sequence
>GWHTAAZE010044 ATGGATTCCTCGTCAAGTAAGTTTGGGGGGTGTGGACACACTTGCGCGAATTCGGGTAACGGCTACAAGGGAGAAATCGAAAGGAAACTGTACCCGACCAGGGATGGACGGAGTGGCTACCTACTGGAGCTTCGACCAACCACCACCGGTCAATTCCGCTTTGGGGCCACCCCTTACTCTACCATTATTATAGGGGTATGGGGTTCGAGACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTTTATACTTTACTTGGATCTGTTTTTATGCTATTAGCTATTCTGTTGATTCTTCTCCAAACAGGAACCACCGATTTACAAATCTCATTAACCACAGAATTTAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTCTTTCGCCTCTTTCGCCGTCAAAGTTCCTATGGTACCAGTTCATATTTGGTCACCCGAAGCTCATGTAGAGGCACCTACGGCAGGATCCGTCATCTTGGCAGGAATTCCATTAAAATTGGGAACCTACGGGTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTCGTTCCACTCCTTTCATTTATACTTCAAGCGCGATTGCTATAATATATACTTCCTCGACCACTTTAAGACAGATCGATCTTAAGAAGATCATTGCTTACTCCTCAGTAGCTCATATGAATCTGGTGACTATTGGTATGTTTAGTCGGGCGGCGGCCGTTAGGTCACCTATTTTGAGTTATGGACACACAAGGCCAAAACATCCCCTTAGCGCCCGGGACGGGAGTGGGGACGGCCCTACGCGCAGGCAACAGCAGCACCGGCTCTATGAAGTCAGAATCGAATCTTTCTGTTGGCTTTCCCAATTCATTCGTGAATCAGAATTCAAGGGCGTGAAGCGAGCGCTTCTAGCTGCTTCGCCTGCTTCTTATTATGGCGGCTATGTTGGCGTGGCGGAAATGAACGAAAAGCGATATGAACGTGCTATTTGCAAATCGATTGATAGATAG

Network for GWHGAAZE010032

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00361.21	Proton_antipo_M	60	233	6.60E-47

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03881	ND4	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Retrograde endocannabinoid signaling	map04723
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0042773	biological_process	ATP synthesis coupled electron transport
GO:0055114	biological_process	oxidation-reduction process
GO:0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.447
	SRR3591706	second leaf	0.118
	SRR3591707	mature leaf	0.201
	SRR3591708	Shoot apex	1.238
	SRR3591709	Stem	0.333
	SRR3591710	White floral bud	0.424
	SRR3591711	White flower	0.202
	SRR3591712	Green floral bud	0.718
	SRR3591713	Yellow flower	0.298
SRP173429	SRR8316895	Juvenile bud stage	7.384
	SRR8316896	Juvenile bud stage	3.825
	SRR8316897	Juvenile bud stage	12.997
	SRR8316894	Third green stage	12.688
	SRR8316900	Third green stage	1.188
	SRR8316901	Third green stage	0.698
	SRR8316898	Complete white stage	3.912
	SRR8316899	Complete white stage	0.451
	SRR8316903	Complete white stage	5.294
	SRR8316902	Silver flowering stage	7.091
	SRR8316904	Silver flowering stage	7.819
	SRR8316905	Silver flowering stage	6.006
	SRR8316906	Gold flowering stage	0.232
	SRR8316907	Gold flowering stage	0.887
	SRR8316908	Gold flowering stage	0.317
SRP132670	SRR6706286	Control	0.680
	SRR6706287	Light intensity 50%	0.888
	SRR6706288	Light intensity 20%	0.560
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.030
	CNS0095593	Slightly white alabastrum(diploid) 2	6.701
	CNS0095594	Slightly white alabastrum(diploid) 3	8.418
	CNS0095595	Whole white alabastrum(diploid) 2	6.903
	CNS0095596	Whole white alabastrum(diploid) 3	4.737
	CNS0095597	Whole white alabastrum(diploid) 4	7.735
	CNS0095598	Silvery flower (diploied) 1	4.418
	CNS0095599	Silvery flower (diploied) 2	6.036
	CNS0095600	Silvery flower (diploied) 3	3.152
	CNS0095601	Golden flower (diploid) 1	5.250
	CNS0095602	Golden flower (diploid) 2	2.168
	CNS0095603	Golden flower (diploid) 3	3.285
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.580
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.399
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.201
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.760
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.018
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.778
	CNS0095610	Silvery flower (tetraploid) 1	1.295
	CNS0095611	Silvery flower (tetraploid) 2	2.264
	CNS0095612	Silvery flower (tetraploid) 3	2.359
	CNS0095613	Golden flower (tetraploid) 1	4.879
	CNS0095614	Golden flower (tetraploid) 2	2.103
	CNS0095615	Golden flower (tetraploid) 3	1.463
CRA001975	CRR073297	Stem 1	2.942
	CRR073298	Stem 2	2.897
	CRR073299	Stem 3	1.123
	CRR073300	Leaf 1	2.004
	CRR073301	Leaf 2	2.687
	CRR073302	Leaf 3	1.208
	CRR073303	Juvenile bud 1	2.757
	CRR073304	Juvenile bud 2	1.342
	CRR073305	Juvenile bud 3	5.533
	CRR073306	Third green 1	1.903
	CRR073307	Third green 2	1.497
	CRR073308	Third green 3	2.362
	CRR073309	Second white 1	3.474
	CRR073310	Second white 2	2.431
	CRR073311	Second white 3	10.398
	CRR073312	Silver flowering 1	6.176
	CRR073313	Silver flowering 2	2.350
	CRR073314	Silver flowering 3	5.347
	CRR073315	Gold flowering 1	1.902
	CRR073316	Gold flowering 2	2.280
	CRR073317	Gold flowering 3	4.143
	CRR073318	Tawny withering 1	3.081
	CRR073319	Tawny withering 2	2.882
	CRR073320	Tawny withering 3	1.286