Detail information of GWHGAAZE010033


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003588264.11.77435E-32hypothetical protein MTR_1g005050 [Medicago truncatula]
Swissprottr|Q04050|NU4M_BRACM2E-12NADH-ubiquinone oxidoreductase chain 4
trEMBLtr|A0A072TI23|A0A072TI23_MEDTR7E-33Uncharacterized protein {ECO:0000313|EMBL:KEH16846.1}
TAIR10ATMG00580.13E-11NADH dehydrogenase subunit 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene122368126122368534+
GWHAAZE00000002mRNA122368126122368534+
GWHAAZE00000002exon122368126122368288+
GWHAAZE00000002exon122368395122368534+
GWHAAZE00000002CDS122368126122368288+
GWHAAZE00000002CDS122368395122368534+
Transcript Sequence

Network for GWHGAAZE010033

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03881ND4 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.635
SRR3591709Stem0.075
SRR3591710White floral bud0.000
SRR3591711White flower0.069
SRR3591712Green floral bud0.527
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 3.305
SRR8316896Juvenile bud stage 1.231
SRR8316897Juvenile bud stage 4.927
SRR8316894Third green stage 4.546
SRR8316900Third green stage 0.366
SRR8316901Third green stage 0.071
SRR8316898Complete white stage 0.708
SRR8316899Complete white stage 0.085
SRR8316903Complete white stage 2.161
SRR8316902Silver flowering stage1.990
SRR8316904Silver flowering stage2.070
SRR8316905Silver flowering stage1.660
SRR8316906Gold flowering stage 0.187
SRR8316907Gold flowering stage 0.243
SRR8316908Gold flowering stage 0.087
SRP132670SRR6706286Control0.680
SRR6706287Light intensity 50%0.432
SRR6706288Light intensity 20%0.338
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.142
CNS0095593Slightly white alabastrum(diploid) 22.727
CNS0095594Slightly white alabastrum(diploid) 33.875
CNS0095595Whole white alabastrum(diploid) 22.329
CNS0095596Whole white alabastrum(diploid) 31.466
CNS0095597Whole white alabastrum(diploid) 42.891
CNS0095598Silvery flower (diploied) 11.400
CNS0095599Silvery flower (diploied) 21.974
CNS0095600Silvery flower (diploied) 31.912
CNS0095601Golden flower (diploid) 12.650
CNS0095602Golden flower (diploid) 20.547
CNS0095603Golden flower (diploid) 31.326
CNS0095604Slightly white alabastrum(tetraploid) 12.474
CNS0095605Slightly white alabastrum(tetraploid) 22.665
CNS0095606Slightly white alabastrum(tetraploid) 31.132
CNS0095607Whole white alabastrum(tetraploid) 10.888
CNS0095608Whole white alabastrum(tetraploid) 22.069
CNS0095609Whole white alabastrum(tetraploid) 31.219
CNS0095610Silvery flower (tetraploid) 10.780
CNS0095611Silvery flower (tetraploid) 20.795
CNS0095612Silvery flower (tetraploid) 30.743
CNS0095613Golden flower (tetraploid) 11.188
CNS0095614Golden flower (tetraploid) 20.555
CNS0095615Golden flower (tetraploid) 30.676
CRA001975CRR073297Stem 13.308
CRR073298Stem 21.487
CRR073299Stem 30.457
CRR073300Leaf 11.188
CRR073301Leaf 21.391
CRR073302Leaf 31.199
CRR073303Juvenile bud 11.215
CRR073304Juvenile bud 20.972
CRR073305Juvenile bud 34.286
CRR073306Third green 11.461
CRR073307Third green 20.786
CRR073308Third green 31.061
CRR073309Second white 13.194
CRR073310Second white 21.261
CRR073311Second white 36.196
CRR073312Silver flowering 12.555
CRR073313Silver flowering 23.366
CRR073314Silver flowering 33.203
CRR073315Gold flowering 10.354
CRR073316Gold flowering 21.452
CRR073317Gold flowering 31.370
CRR073318Tawny withering 10.629
CRR073319Tawny withering 20.291
CRR073320Tawny withering 30.000