Detail information of GWHGAAZE010061


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_003588264.15.2187E-31hypothetical protein MTR_1g005050 [Medicago truncatula]
Swissprottr|Q04050|NU4M_BRACM2E-12NADH-ubiquinone oxidoreductase chain 4
trEMBLtr|A0A072TI23|A0A072TI23_MEDTR2E-31Uncharacterized protein {ECO:0000313|EMBL:KEH16846.1}
TAIR10ATMG00580.13E-11NADH dehydrogenase subunit 4

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene122833791122834197-
GWHAAZE00000002mRNA122833791122834197-
GWHAAZE00000002exon122833791122833944-
GWHAAZE00000002exon122834022122834197-
GWHAAZE00000002CDS122834022122834197-
GWHAAZE00000002CDS122833791122833944-
Transcript Sequence

Network for GWHGAAZE010061

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
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Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03881ND4 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.000
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.238
SRR3591709Stem0.080
SRR3591710White floral bud0.000
SRR3591711White flower0.073
SRR3591712Green floral bud0.213
SRR3591713Yellow flower0.000
SRP173429 SRR8316895Juvenile bud stage 1.312
SRR8316896Juvenile bud stage 0.439
SRR8316897Juvenile bud stage 1.504
SRR8316894Third green stage 1.824
SRR8316900Third green stage 0.152
SRR8316901Third green stage 0.085
SRR8316898Complete white stage 0.391
SRR8316899Complete white stage 0.078
SRR8316903Complete white stage 1.054
SRR8316902Silver flowering stage0.993
SRR8316904Silver flowering stage0.769
SRR8316905Silver flowering stage0.560
SRR8316906Gold flowering stage 0.058
SRR8316907Gold flowering stage 0.000
SRR8316908Gold flowering stage 0.065
SRP132670SRR6706286Control0.118
SRR6706287Light intensity 50%0.122
SRR6706288Light intensity 20%0.081
CNP0000432CNS0095592Slightly white alabastrum(diploid) 11.337
CNS0095593Slightly white alabastrum(diploid) 20.859
CNS0095594Slightly white alabastrum(diploid) 30.383
CNS0095595Whole white alabastrum(diploid) 20.921
CNS0095596Whole white alabastrum(diploid) 30.342
CNS0095597Whole white alabastrum(diploid) 40.920
CNS0095598Silvery flower (diploied) 10.361
CNS0095599Silvery flower (diploied) 20.082
CNS0095600Silvery flower (diploied) 31.123
CNS0095601Golden flower (diploid) 11.333
CNS0095602Golden flower (diploid) 20.406
CNS0095603Golden flower (diploid) 30.458
CNS0095604Slightly white alabastrum(tetraploid) 11.496
CNS0095605Slightly white alabastrum(tetraploid) 21.031
CNS0095606Slightly white alabastrum(tetraploid) 30.268
CNS0095607Whole white alabastrum(tetraploid) 10.615
CNS0095608Whole white alabastrum(tetraploid) 21.151
CNS0095609Whole white alabastrum(tetraploid) 31.092
CNS0095610Silvery flower (tetraploid) 10.274
CNS0095611Silvery flower (tetraploid) 20.390
CNS0095612Silvery flower (tetraploid) 30.245
CNS0095613Golden flower (tetraploid) 10.300
CNS0095614Golden flower (tetraploid) 20.250
CNS0095615Golden flower (tetraploid) 30.077
CRA001975CRR073297Stem 11.528
CRR073298Stem 20.267
CRR073299Stem 30.430
CRR073300Leaf 10.531
CRR073301Leaf 21.613
CRR073302Leaf 30.527
CRR073303Juvenile bud 10.419
CRR073304Juvenile bud 20.426
CRR073305Juvenile bud 31.789
CRR073306Third green 10.962
CRR073307Third green 20.729
CRR073308Third green 31.230
CRR073309Second white 11.308
CRR073310Second white 20.751
CRR073311Second white 32.361
CRR073312Silver flowering 11.859
CRR073313Silver flowering 21.934
CRR073314Silver flowering 30.637
CRR073315Gold flowering 10.346
CRR073316Gold flowering 20.869
CRR073317Gold flowering 31.060
CRR073318Tawny withering 10.628
CRR073319Tawny withering 20.494
CRR073320Tawny withering 30.000