Gene detail

Detail information of GWHGAAZE010063

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	XP_003588268.1	9.5375E-157	NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
Swissprot	tr\|Q04050\|NU4M_BRACM	4E-102	NADH-ubiquinone oxidoreductase chain 4
trEMBL	tr\|A0A072TTK3\|A0A072TTK3_MEDTR	4E-157	NADH-quinone oxidoreductase protein {ECO:0000313\|EMBL:KEH16850.1}
TAIR10	ATMG00580.1	2E-67	NADH dehydrogenase subunit 4

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	122839147	122842986	-
GWHAAZE00000002	mRNA	122839147	122842986	-
GWHAAZE00000002	exon	122842893	122842986	-
GWHAAZE00000002	exon	122841031	122841311	-
GWHAAZE00000002	exon	122840820	122840932	-
GWHAAZE00000002	exon	122840088	122840230	-
GWHAAZE00000002	exon	122839147	122839823	-
GWHAAZE00000002	CDS	122842893	122842986	-
GWHAAZE00000002	CDS	122841031	122841311	-
GWHAAZE00000002	CDS	122840820	122840932	-
GWHAAZE00000002	CDS	122840088	122840230	-
GWHAAZE00000002	CDS	122839147	122839823	-

Transcript Sequence
>GWHTAAZE010075 ATGGAGCGTTCTAATCGAAGGGTAATACCTCTCGGACCTATTACGGTAAGGCCAATGCACCAGCCAGCCAGTGTGGTGGCGAACACGCTGTGCTTGGGTTGGTCTGGTATGAGAAGTTATGGGAAAGAGTATATTACAGCATCTCTAATTCGTGAATTTCTAATGATCGCCGTGTTCCGCATGCTGGATCCTCTACTATTCTATGTTCTTCCCGAAAGCGTGCCAATCCCTATGTTGTGCGGAGCTGAGCATCTTCTATTCGCTGGGATAAAGCTTTTCCTCTGCAGGGCCTTGTGCAGTAAACCCCTACGGGCGGTCGTCCGTCGTCGTCAAGTAGTCCCCGCGAAGCTTTCGGGAAGAGGGGTAGTCTTGTGTTGGGTACCTCAGGACCTCGACCCGCCTACTCGGGTCTTGTATGGATATGCAGGAAGGGTGCTCCTAGGTGTGTGTGGGGTTGTGTTTGTTCGCGAGAATGGATTCCTCGTCAAATATCTAGAGAGAGAGAGAGATCCGCTGCGTGAGCAACCCGACTGTGCGTTACATGTGCTCTACAGGCCGCACTCCTCTTCCCAACGAGCCAATTTATCTTTTGATTTGGAAGACGGGCGTTGCGTTCGGTTCGAAAGGCATGGGAGTGGCTACCTACTGGAGCTTCGACCAACCACCACCGGTCAATTCCGCTTTGGGGCCACCCCTTACTCTACCATTATTATAGGGGTATGGGGTTCGAGACAAAGAAAGATCAAGGCAGCATATCAGTTTTTCCTTTATACTTTACTTGGATCTGTTTTTATGCTATTAGCTATTCTGTTGATTCTTCTCCAAACAGGAACCACCGATTTACAAATCTCATTAACCACAGAATTTAGTGAGCGGCGCCAAATCTTTCTATGGATTGCTTCTTTCGCCTCTTTCGCCGTCAAAGTTCCTATGGTACCAGTTCATATTTGGTCACCCGAAGCTCATGTAGAGGCACCTACGGCAGGATCCGTCATCTTGGCAGGAATTCCATTAAAATTGGGAACCTACGGGTTTTTAAGATTTTCAATACCCATGTTTCCCGAAGCGACACTTCGTTCCACTCCTTTCATTTATACTTCAAGCGCGATTGCTATAATATATACTTCCTCGACCACTTTAAGACAGATCGATCTTAAGAAGATCATTGCTTACTCCTCAGTAGCTCATATGAATCTGGTGACTATTGGTATGTTTAGTCGGGCGGCGGCCGTTAGGTCACCTATTTTGAGTTATGGACACACAAGGCCAAAACATGTGTGCCGGGCGTGCGACCCATCAACCTACTAG

Network for GWHGAAZE010063

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00361.21	Proton_antipo_M	234	407	1.30E-46

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03881	ND4	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Retrograde endocannabinoid signaling	map04723
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0042773	biological_process	ATP synthesis coupled electron transport
GO:0055114	biological_process	oxidation-reduction process
GO:0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.276
	SRR3591706	second leaf	0.112
	SRR3591707	mature leaf	0.221
	SRR3591708	Shoot apex	0.928
	SRR3591709	Stem	0.304
	SRR3591710	White floral bud	0.244
	SRR3591711	White flower	0.168
	SRR3591712	Green floral bud	0.429
	SRR3591713	Yellow flower	0.224
SRP173429	SRR8316895	Juvenile bud stage	5.423
	SRR8316896	Juvenile bud stage	2.823
	SRR8316897	Juvenile bud stage	10.968
	SRR8316894	Third green stage	9.123
	SRR8316900	Third green stage	0.808
	SRR8316901	Third green stage	0.428
	SRR8316898	Complete white stage	2.906
	SRR8316899	Complete white stage	0.234
	SRR8316903	Complete white stage	4.331
	SRR8316902	Silver flowering stage	5.935
	SRR8316904	Silver flowering stage	6.240
	SRR8316905	Silver flowering stage	5.269
	SRR8316906	Gold flowering stage	0.179
	SRR8316907	Gold flowering stage	1.131
	SRR8316908	Gold flowering stage	0.277
SRP132670	SRR6706286	Control	0.476
	SRR6706287	Light intensity 50%	0.749
	SRR6706288	Light intensity 20%	0.402
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	4.937
	CNS0095593	Slightly white alabastrum(diploid) 2	4.528
	CNS0095594	Slightly white alabastrum(diploid) 3	6.241
	CNS0095595	Whole white alabastrum(diploid) 2	5.125
	CNS0095596	Whole white alabastrum(diploid) 3	5.336
	CNS0095597	Whole white alabastrum(diploid) 4	6.711
	CNS0095598	Silvery flower (diploied) 1	4.177
	CNS0095599	Silvery flower (diploied) 2	4.051
	CNS0095600	Silvery flower (diploied) 3	2.346
	CNS0095601	Golden flower (diploid) 1	3.874
	CNS0095602	Golden flower (diploid) 2	1.491
	CNS0095603	Golden flower (diploid) 3	2.540
	CNS0095604	Slightly white alabastrum(tetraploid) 1	4.989
	CNS0095605	Slightly white alabastrum(tetraploid) 2	5.343
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.725
	CNS0095607	Whole white alabastrum(tetraploid) 1	4.729
	CNS0095608	Whole white alabastrum(tetraploid) 2	5.841
	CNS0095609	Whole white alabastrum(tetraploid) 3	2.758
	CNS0095610	Silvery flower (tetraploid) 1	1.172
	CNS0095611	Silvery flower (tetraploid) 2	1.951
	CNS0095612	Silvery flower (tetraploid) 3	1.412
	CNS0095613	Golden flower (tetraploid) 1	3.807
	CNS0095614	Golden flower (tetraploid) 2	1.796
	CNS0095615	Golden flower (tetraploid) 3	1.103
CRA001975	CRR073297	Stem 1	2.516
	CRR073298	Stem 2	2.248
	CRR073299	Stem 3	0.681
	CRR073300	Leaf 1	1.876
	CRR073301	Leaf 2	2.028
	CRR073302	Leaf 3	0.690
	CRR073303	Juvenile bud 1	1.950
	CRR073304	Juvenile bud 2	1.589
	CRR073305	Juvenile bud 3	5.067
	CRR073306	Third green 1	1.703
	CRR073307	Third green 2	0.764
	CRR073308	Third green 3	2.460
	CRR073309	Second white 1	2.739
	CRR073310	Second white 2	2.381
	CRR073311	Second white 3	8.280
	CRR073312	Silver flowering 1	5.602
	CRR073313	Silver flowering 2	2.008
	CRR073314	Silver flowering 3	3.623
	CRR073315	Gold flowering 1	1.513
	CRR073316	Gold flowering 2	1.012
	CRR073317	Gold flowering 3	2.916
	CRR073318	Tawny withering 1	2.417
	CRR073319	Tawny withering 2	1.285
	CRR073320	Tawny withering 3	0.656