Detail information of GWHGAAZE010074


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrCDY65732.17.37982E-34BnaCnng48510D [Brassica napus]
trEMBLtr|A0A078JK64|A0A078JK64_BRANA3E-34BnaCnng48510D protein {ECO:0000313|EMBL:CDY65732.1}

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene122948592122948995+
GWHAAZE00000002mRNA122948592122948995+
GWHAAZE00000002exon122948592122948602+
GWHAAZE00000002exon122948752122948995+
GWHAAZE00000002CDS122948592122948602+
GWHAAZE00000002CDS122948752122948995+
Transcript Sequence

Network for GWHGAAZE010074

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0034


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
--------

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.377
SRR3591706second leaf0.000
SRR3591707mature leaf0.000
SRR3591708Shoot apex0.926
SRR3591709Stem0.224
SRR3591710White floral bud0.921
SRR3591711White flower0.487
SRR3591712Green floral bud0.711
SRR3591713Yellow flower0.158
SRP173429 SRR8316895Juvenile bud stage 4.184
SRR8316896Juvenile bud stage 2.598
SRR8316897Juvenile bud stage 7.444
SRR8316894Third green stage 9.899
SRR8316900Third green stage 1.504
SRR8316901Third green stage 1.033
SRR8316898Complete white stage 2.335
SRR8316899Complete white stage 0.083
SRR8316903Complete white stage 2.174
SRR8316902Silver flowering stage4.217
SRR8316904Silver flowering stage2.983
SRR8316905Silver flowering stage2.441
SRR8316906Gold flowering stage 0.108
SRR8316907Gold flowering stage 3.181
SRR8316908Gold flowering stage 0.058
SRP132670SRR6706286Control0.680
SRR6706287Light intensity 50%1.526
SRR6706288Light intensity 20%1.183
CNP0000432CNS0095592Slightly white alabastrum(diploid) 18.031
CNS0095593Slightly white alabastrum(diploid) 28.495
CNS0095594Slightly white alabastrum(diploid) 39.773
CNS0095595Whole white alabastrum(diploid) 27.336
CNS0095596Whole white alabastrum(diploid) 37.578
CNS0095597Whole white alabastrum(diploid) 411.286
CNS0095598Silvery flower (diploied) 13.285
CNS0095599Silvery flower (diploied) 22.730
CNS0095600Silvery flower (diploied) 32.310
CNS0095601Golden flower (diploid) 15.804
CNS0095602Golden flower (diploid) 22.722
CNS0095603Golden flower (diploid) 31.896
CNS0095604Slightly white alabastrum(tetraploid) 15.669
CNS0095605Slightly white alabastrum(tetraploid) 27.265
CNS0095606Slightly white alabastrum(tetraploid) 34.588
CNS0095607Whole white alabastrum(tetraploid) 112.630
CNS0095608Whole white alabastrum(tetraploid) 29.121
CNS0095609Whole white alabastrum(tetraploid) 34.435
CNS0095610Silvery flower (tetraploid) 11.593
CNS0095611Silvery flower (tetraploid) 22.179
CNS0095612Silvery flower (tetraploid) 31.764
CNS0095613Golden flower (tetraploid) 14.793
CNS0095614Golden flower (tetraploid) 22.232
CNS0095615Golden flower (tetraploid) 31.789
CRA001975CRR073297Stem 12.304
CRR073298Stem 23.024
CRR073299Stem 34.366
CRR073300Leaf 12.648
CRR073301Leaf 23.332
CRR073302Leaf 34.085
CRR073303Juvenile bud 14.800
CRR073304Juvenile bud 21.938
CRR073305Juvenile bud 36.702
CRR073306Third green 11.345
CRR073307Third green 23.271
CRR073308Third green 32.360
CRR073309Second white 14.338
CRR073310Second white 24.528
CRR073311Second white 36.098
CRR073312Silver flowering 15.426
CRR073313Silver flowering 25.916
CRR073314Silver flowering 33.034
CRR073315Gold flowering 11.652
CRR073316Gold flowering 21.684
CRR073317Gold flowering 34.156
CRR073318Tawny withering 14.244
CRR073319Tawny withering 22.920
CRR073320Tawny withering 33.500