Gene detail

Detail information of GWHGAAZE010075

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	AHC94299.1	1.1868E-128	NADH dehydrogenase subunit 7, partial (mitochondrion) [Amborella trichopoda]
Swissprot	tr\|P93306\|NDUS2_ARATH	3E-130	NADH dehydrogenase [ubiquinone] iron-sulfur protein 2
trEMBL	tr\|V9VFV2\|V9VFV2_AMBTC	4E-129	NADH dehydrogenase subunit 7 {ECO:0000313\|EMBL:AHC94299.1} (Fragment)
TAIR10	ATMG00510.1	3E-103	NADH dehydrogenase subunit 7

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	122951407	122954010	+
GWHAAZE00000002	mRNA	122951407	122954010	+
GWHAAZE00000002	exon	122951407	122951963	+
GWHAAZE00000002	exon	122952045	122952254	+
GWHAAZE00000002	exon	122952338	122952439	+
GWHAAZE00000002	exon	122952684	122952975	+
GWHAAZE00000002	exon	122953612	122954010	+
GWHAAZE00000002	CDS	122951407	122951963	+
GWHAAZE00000002	CDS	122952045	122952254	+
GWHAAZE00000002	CDS	122952338	122952439	+
GWHAAZE00000002	CDS	122952684	122952975	+
GWHAAZE00000002	CDS	122953612	122954010	+

Transcript Sequence
>GWHTAAZE010087 ATGGATGTGGGAGCATTAACTCCGTTCCTGTGGGCTTTTGAGGAGCGGGAGAAATTGTTAGAATTCTACGAAAGAGTCTCGGGAGCCAGGATGCATGCCAGTTTCATACGACCAGGTGGAGTGGCACAAGATCTGCCTCTTGGCTTATGTCGAGATATTGATTCCTCCACACAACAATTTGCTTCTCGTATCGACGAATTAGAAGAAATGTTAACTGGCAACCGTATCTGGAAACAACGATTAGTGGATATTGGTACTGTCACTGCACAGCAAGCAAAGGATTGGGGATTCAGTGGTGTAATGTTAAGAGGTTCCGGGGTATGCTGGGATTTGCGAAGAGCAGCACCTTACGATGTTTATGACCAATTGGATTTTGACGTACCAGTAGGTACCAGAGGAGATTGCTATGATCGTTACTGTATTCGTATCGAAGAGATGCGACAAAGTGTTCGGATCATTGTGCAATGTCCTAATCAAATGCCTAGTGGCATGATCAAAGCCGATGATCGTAAGCTATGTCCTCCATCACGATGTCGAATGAAACTATCCATGGAATCGAGTAAAGCATCCCGAGGTTGGCGCATCTCGTTGAGCGTGGAGAAGCATTGGGAACCCCAATTTCTTTCTTCGGAGCCGTTTCTTTTCCCGTCCCCCCGCCCCGGCATAGCGCTTCGCTTCCGGTTCTTCGGAAGAATCAACTTACTTCTCCCTTCTTCATGGATCTGGGGGAAAAGGAGCCGTCTACCAGTTGGGAAGCTAGACATCAAGCGGACGCGCGGTAGCGTTCGTGGTGGTGCTTCAGGATTCCAATGTACTGCGTCCAAGATCAGAACGAGCTTGCCGGCGGACCACTGCCGTCCCATTCTTGAGTTGGGTTGCTGGATACGGGATCCTCGTAGTAGGCTGGACCAACATCCAGCCGAGAGAGGGCAGTCTTTAGAAGCAACAGGTTGGGAAACCAAGAGAACGCTTCGCGTTTTCTTATCTTCTTCCCGCCCTAGGAGTAGGAGTAGGACAAAAAGAGGGATTAGCATTATTGACCTAAAACCACTAACACCTTCCTCGTTGGGGCCCCGCGCATTGGGAAAACGCTCTAGCGACGGGAAACCGGCCACTAGTTACAAAGCTCCAAGAAGGTCTCGAGAGGGCTATCACAGCCAGATAGAAAGCCCTATGATGGGAAACTACCACGTTAGGTTTGGAGAGAGATGGGACCGGTTATATAATAGGGGGAGCAGATGCAAGCTTTTTCTTTCAATAACCGGCCAAATGACTACAGGATCATCGGTCTACTCTACCTCAATTCACCATTTCGAACCTTATACAGAAGGTTTTTCCGTACCAGCTCCTTCTACCTATACCGCAGTTGAAGCACCTAAAGGAGAATTTGGTGTCTTTCTGGTCAGTAATGGAAGCAATCGTCCCTACCGTCGTAAAATAAGAGCACCTGGCTCTGCCCATTCACAAGGACTCGATTCTATGTCCAAACATCACATGCCAGCAGATGTGGTCACCATCATAGGTACTCAAGATATTGTGTTTGGAGAGGTGGATAGATAG

Network for GWHGAAZE010075

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00346.20	Complex1_49kDa	2	188	3.70E-77
PF00346.20	Complex1_49kDa	431	519	2.40E-28

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K03935	NDUFS2	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Retrograde endocannabinoid signaling	map04723
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0055114	biological_process	oxidation-reduction process
GO:0016651	molecular_function	oxidoreductase activity, acting on NAD(P)H
GO:0048038	molecular_function	quinone binding
GO:0051287	molecular_function	NAD binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.231
	SRR3591706	second leaf	0.731
	SRR3591707	mature leaf	0.391
	SRR3591708	Shoot apex	2.226
	SRR3591709	Stem	0.325
	SRR3591710	White floral bud	1.189
	SRR3591711	White flower	1.096
	SRR3591712	Green floral bud	1.822
	SRR3591713	Yellow flower	0.686
SRP173429	SRR8316895	Juvenile bud stage	13.211
	SRR8316896	Juvenile bud stage	7.451
	SRR8316897	Juvenile bud stage	27.071
	SRR8316894	Third green stage	29.229
	SRR8316900	Third green stage	2.667
	SRR8316901	Third green stage	2.383
	SRR8316898	Complete white stage	13.866
	SRR8316899	Complete white stage	1.167
	SRR8316903	Complete white stage	15.340
	SRR8316902	Silver flowering stage	20.242
	SRR8316904	Silver flowering stage	20.021
	SRR8316905	Silver flowering stage	16.726
	SRR8316906	Gold flowering stage	0.587
	SRR8316907	Gold flowering stage	1.417
	SRR8316908	Gold flowering stage	0.592
SRP132670	SRR6706286	Control	1.373
	SRR6706287	Light intensity 50%	1.660
	SRR6706288	Light intensity 20%	1.864
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	11.509
	CNS0095593	Slightly white alabastrum(diploid) 2	11.683
	CNS0095594	Slightly white alabastrum(diploid) 3	13.882
	CNS0095595	Whole white alabastrum(diploid) 2	12.377
	CNS0095596	Whole white alabastrum(diploid) 3	10.578
	CNS0095597	Whole white alabastrum(diploid) 4	15.625
	CNS0095598	Silvery flower (diploied) 1	14.025
	CNS0095599	Silvery flower (diploied) 2	11.990
	CNS0095600	Silvery flower (diploied) 3	5.672
	CNS0095601	Golden flower (diploid) 1	9.461
	CNS0095602	Golden flower (diploid) 2	3.811
	CNS0095603	Golden flower (diploid) 3	5.351
	CNS0095604	Slightly white alabastrum(tetraploid) 1	11.363
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.515
	CNS0095606	Slightly white alabastrum(tetraploid) 3	4.496
	CNS0095607	Whole white alabastrum(tetraploid) 1	13.847
	CNS0095608	Whole white alabastrum(tetraploid) 2	15.069
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.514
	CNS0095610	Silvery flower (tetraploid) 1	2.684
	CNS0095611	Silvery flower (tetraploid) 2	3.461
	CNS0095612	Silvery flower (tetraploid) 3	2.721
	CNS0095613	Golden flower (tetraploid) 1	12.191
	CNS0095614	Golden flower (tetraploid) 2	4.382
	CNS0095615	Golden flower (tetraploid) 3	2.274
CRA001975	CRR073297	Stem 1	6.824
	CRR073298	Stem 2	7.200
	CRR073299	Stem 3	3.534
	CRR073300	Leaf 1	4.419
	CRR073301	Leaf 2	5.820
	CRR073302	Leaf 3	6.325
	CRR073303	Juvenile bud 1	8.162
	CRR073304	Juvenile bud 2	4.215
	CRR073305	Juvenile bud 3	13.781
	CRR073306	Third green 1	5.226
	CRR073307	Third green 2	2.563
	CRR073308	Third green 3	6.446
	CRR073309	Second white 1	6.873
	CRR073310	Second white 2	12.849
	CRR073311	Second white 3	28.266
	CRR073312	Silver flowering 1	19.808
	CRR073313	Silver flowering 2	9.724
	CRR073314	Silver flowering 3	11.929
	CRR073315	Gold flowering 1	6.731
	CRR073316	Gold flowering 2	6.170
	CRR073317	Gold flowering 3	10.832
	CRR073318	Tawny withering 1	8.603
	CRR073319	Tawny withering 2	11.980
	CRR073320	Tawny withering 3	6.741