Gene detail

Detail information of GWHGAAZE010077

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	O04916.1ACOC_SOLTU	5.8263E-123	RecName: Full=Aconitate hydratase, cytoplasmic; Short=Aconitase; AltName: Full=Citrate hydro-lyase, partial [Solanum tuberosum]
Swissprot	tr\|O04916\|ACOC_SOLTU	3E-125	Aconitate hydratase, cytoplasmic (Fragment)
trEMBL	tr\|A5AXW8\|A5AXW8_VITVI	8E-123	Putative uncharacterized protein {ECO:0000313\|EMBL:CAN62964.1}
TAIR10	AT2G05710.1	2E-97	aconitase 3

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123036315	123036962	+
GWHAAZE00000002	mRNA	123036315	123036962	+
GWHAAZE00000002	exon	123036315	123036962	+
GWHAAZE00000002	CDS	123036315	123036962	+

Transcript Sequence
>GWHTAAZE010089 TTTGCTTCGCCTCCTTTAGTTCTGGCCTATGCCCTTGCTGGCACGGTTGACATTGATTTTGAGAAGGATCCAATTGGAGTGGGAAAGGATGGTAAGAATGTCTATCTCAAGGATATCTGGCCGAGTACCGAAGAAGTTGCAGAGGCTGTTCAATCCAGTGTATTGCCTGATATGTTCAAGAGTACTTATGAAGCTATCACAAAGGCGAATTCCATGTGGAATCAAGTATCAGTCCCAGCATCCAAGCTGTACTCATGGGACCCAAGTTCTACTTACATTCATGAGCCGCCATATTTCAAAAACATGACCATGGATCCCCCTGGACCCCATGGAGTGAAGGATGCCTATTGCTTGCTGAACTTTGGTGACAGTATTACAACCGATCACATTTCACCAGCAGGAAGCATTCACAAGGATAGCCCGGCTGCAAAGTTTCTTCTTGAGCGTGGGGTTGATCGCAAGGACTTCAATTCTTATGGCAGTTGGCGATGTAATGATGAAATTATGGCAAGGGGAACTTTTTCCAATATCAGCCTTGTTAACAAGCTCAACAATGGAGAAGTTGGCCAAAAGACAAGAAAAATTCCCACAGGAGAGAAAGTCTATGTTGGTAGGGAGGAGGAGACCTTTTCACCTGCCTTACTATGA

Network for GWHGAAZE010077

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00694.20	Aconitase_C	143	203	1.00E-05

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01681	ACO, acnA	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		2-Oxocarboxylic acid metabolism	map01210
		Biosynthesis of amino acids	map01230
		Citrate cycle	map00020
		Glyoxylate and dicarboxylate metabolism	map00630
		Carbon fixation pathways in prokaryotes	map00720

Gene Ontology

GO term	Ontology	Name

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.000
	SRR3591706	second leaf	0.000
	SRR3591707	mature leaf	0.000
	SRR3591708	Shoot apex	0.000
	SRR3591709	Stem	0.000
	SRR3591710	White floral bud	0.000
	SRR3591711	White flower	0.000
	SRR3591712	Green floral bud	0.000
	SRR3591713	Yellow flower	0.089
SRP173429	SRR8316895	Juvenile bud stage	0.001
	SRR8316896	Juvenile bud stage	0.000
	SRR8316897	Juvenile bud stage	0.083
	SRR8316894	Third green stage	0.065
	SRR8316900	Third green stage	0.000
	SRR8316901	Third green stage	0.036
	SRR8316898	Complete white stage	0.067
	SRR8316899	Complete white stage	0.000
	SRR8316903	Complete white stage	0.000
	SRR8316902	Silver flowering stage	0.226
	SRR8316904	Silver flowering stage	0.044
	SRR8316905	Silver flowering stage	0.130
	SRR8316906	Gold flowering stage	0.000
	SRR8316907	Gold flowering stage	0.000
	SRR8316908	Gold flowering stage	0.000
SRP132670	SRR6706286	Control	0.023
	SRR6706287	Light intensity 50%	0.056
	SRR6706288	Light intensity 20%	0.015
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	0.074
	CNS0095593	Slightly white alabastrum(diploid) 2	0.000
	CNS0095594	Slightly white alabastrum(diploid) 3	0.000
	CNS0095595	Whole white alabastrum(diploid) 2	0.027
	CNS0095596	Whole white alabastrum(diploid) 3	0.000
	CNS0095597	Whole white alabastrum(diploid) 4	0.000
	CNS0095598	Silvery flower (diploied) 1	0.000
	CNS0095599	Silvery flower (diploied) 2	0.000
	CNS0095600	Silvery flower (diploied) 3	0.000
	CNS0095601	Golden flower (diploid) 1	0.109
	CNS0095602	Golden flower (diploid) 2	0.000
	CNS0095603	Golden flower (diploid) 3	0.033
	CNS0095604	Slightly white alabastrum(tetraploid) 1	0.006
	CNS0095605	Slightly white alabastrum(tetraploid) 2	0.117
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.000
	CNS0095607	Whole white alabastrum(tetraploid) 1	0.043
	CNS0095608	Whole white alabastrum(tetraploid) 2	0.000
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.050
	CNS0095610	Silvery flower (tetraploid) 1	0.000
	CNS0095611	Silvery flower (tetraploid) 2	0.000
	CNS0095612	Silvery flower (tetraploid) 3	0.076
	CNS0095613	Golden flower (tetraploid) 1	0.000
	CNS0095614	Golden flower (tetraploid) 2	0.000
	CNS0095615	Golden flower (tetraploid) 3	0.000
CRA001975	CRR073297	Stem 1	0.000
	CRR073298	Stem 2	0.000
	CRR073299	Stem 3	0.000
	CRR073300	Leaf 1	0.000
	CRR073301	Leaf 2	0.000
	CRR073302	Leaf 3	0.000
	CRR073303	Juvenile bud 1	0.000
	CRR073304	Juvenile bud 2	0.000
	CRR073305	Juvenile bud 3	0.000
	CRR073306	Third green 1	0.002
	CRR073307	Third green 2	0.000
	CRR073308	Third green 3	0.057
	CRR073309	Second white 1	0.118
	CRR073310	Second white 2	0.111
	CRR073311	Second white 3	0.327
	CRR073312	Silver flowering 1	0.062
	CRR073313	Silver flowering 2	0.000
	CRR073314	Silver flowering 3	0.000
	CRR073315	Gold flowering 1	0.000
	CRR073316	Gold flowering 2	0.000
	CRR073317	Gold flowering 3	0.000
	CRR073318	Tawny withering 1	0.000
	CRR073319	Tawny withering 2	0.000
	CRR073320	Tawny withering 3	0.064