Detail information of GWHGAAZE010080


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAGC78848.11.15095E-42hypothetical protein (mitochondrion) [Vicia faba]
Swissprottr|P93314|M590_ARATH2E-29Uncharacterized mitochondrial cytochrome b-like protein AtMg00590
trEMBLtr|R4IV22|R4IV22_VICFA4E-43Uncharacterized protein {ECO:0000313|EMBL:AGC78848.1}
TAIR10ATMG00590.14E-20Cytochrome b/b6 protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123048002123049140-
GWHAAZE00000002mRNA123048002123049140-
GWHAAZE00000002exon123048585123049140-
GWHAAZE00000002exon123048002123048114-
GWHAAZE00000002CDS123048585123049140-
GWHAAZE00000002CDS123048002123048114-
Transcript Sequence

Network for GWHGAAZE010080

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
----------
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03880ND3 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.123
SRR3591706second leaf0.246
SRR3591707mature leaf0.010
SRR3591708Shoot apex0.707
SRR3591709Stem0.060
SRR3591710White floral bud0.904
SRR3591711White flower0.307
SRR3591712Green floral bud1.005
SRR3591713Yellow flower0.749
SRP173429 SRR8316895Juvenile bud stage 2.720
SRR8316896Juvenile bud stage 2.575
SRR8316897Juvenile bud stage 5.933
SRR8316894Third green stage 2.863
SRR8316900Third green stage 1.764
SRR8316901Third green stage 1.262
SRR8316898Complete white stage 0.693
SRR8316899Complete white stage 1.589
SRR8316903Complete white stage 0.848
SRR8316902Silver flowering stage1.304
SRR8316904Silver flowering stage1.654
SRR8316905Silver flowering stage0.670
SRR8316906Gold flowering stage 0.405
SRR8316907Gold flowering stage 0.378
SRR8316908Gold flowering stage 0.920
SRP132670SRR6706286Control0.035
SRR6706287Light intensity 50%0.201
SRR6706288Light intensity 20%0.160
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.677
CNS0095593Slightly white alabastrum(diploid) 20.982
CNS0095594Slightly white alabastrum(diploid) 33.670
CNS0095595Whole white alabastrum(diploid) 24.064
CNS0095596Whole white alabastrum(diploid) 32.868
CNS0095597Whole white alabastrum(diploid) 43.573
CNS0095598Silvery flower (diploied) 10.857
CNS0095599Silvery flower (diploied) 21.779
CNS0095600Silvery flower (diploied) 30.732
CNS0095601Golden flower (diploid) 11.213
CNS0095602Golden flower (diploid) 20.605
CNS0095603Golden flower (diploid) 30.979
CNS0095604Slightly white alabastrum(tetraploid) 11.972
CNS0095605Slightly white alabastrum(tetraploid) 22.028
CNS0095606Slightly white alabastrum(tetraploid) 30.662
CNS0095607Whole white alabastrum(tetraploid) 11.675
CNS0095608Whole white alabastrum(tetraploid) 21.728
CNS0095609Whole white alabastrum(tetraploid) 30.868
CNS0095610Silvery flower (tetraploid) 10.128
CNS0095611Silvery flower (tetraploid) 20.250
CNS0095612Silvery flower (tetraploid) 30.304
CNS0095613Golden flower (tetraploid) 11.182
CNS0095614Golden flower (tetraploid) 20.291
CNS0095615Golden flower (tetraploid) 30.264
CRA001975CRR073297Stem 13.645
CRR073298Stem 23.622
CRR073299Stem 30.273
CRR073300Leaf 11.815
CRR073301Leaf 21.958
CRR073302Leaf 30.120
CRR073303Juvenile bud 10.132
CRR073304Juvenile bud 20.135
CRR073305Juvenile bud 30.523
CRR073306Third green 10.138
CRR073307Third green 20.319
CRR073308Third green 30.224
CRR073309Second white 10.026
CRR073310Second white 20.339
CRR073311Second white 32.324
CRR073312Silver flowering 10.776
CRR073313Silver flowering 20.377
CRR073314Silver flowering 30.236
CRR073315Gold flowering 10.035
CRR073316Gold flowering 20.145
CRR073317Gold flowering 30.948
CRR073318Tawny withering 10.229
CRR073319Tawny withering 20.100
CRR073320Tawny withering 30.143