Gene detail

Detail information of GWHGAAZE010084

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	CAA78408.1	3.63115E-89	pseudo-atpA [Glycine max]
Swissprot	tr\|P05495\|ATPAM_NICPL	1E-89	ATP synthase subunit alpha, mitochondrial
trEMBL	tr\|Q6I8E6\|Q6I8E6_SOYBN	1E-89	Pseudo-atpA {ECO:0000313\|EMBL:CAA78408.1} (Fragment)
TAIR10	AT2G07698.1	1E-70	ATPase, F1 complex, alpha subunit protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123085186	123088066	+
GWHAAZE00000002	mRNA	123085186	123088066	+
GWHAAZE00000002	exon	123085186	123085857	+
GWHAAZE00000002	exon	123085937	123086171	+
GWHAAZE00000002	exon	123086761	123086923	+
GWHAAZE00000002	exon	123087165	123087254	+
GWHAAZE00000002	exon	123087429	123087554	+
GWHAAZE00000002	exon	123087670	123087713	+
GWHAAZE00000002	exon	123087924	123088066	+
GWHAAZE00000002	CDS	123085186	123085857	+
GWHAAZE00000002	CDS	123085937	123086171	+
GWHAAZE00000002	CDS	123086761	123086923	+
GWHAAZE00000002	CDS	123087165	123087254	+
GWHAAZE00000002	CDS	123087429	123087554	+
GWHAAZE00000002	CDS	123087670	123087713	+
GWHAAZE00000002	CDS	123087924	123088066	+

Transcript Sequence
>GWHTAAZE010096 GCTGCCGAACTAACGACTCTCTTAGAAAGTAGAATTAGCAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATACTGCTATTAAAGAAGGGGATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTTGACGGGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCTGTCCACGAGCCTATGCGCCGCCTTTTATTAGTCTTGGCTCTATACGATGATAGAAGACTCCTCCTTTTCTTTTGTTCTCTACCACTTATCAAAAATTTACCTAAAAGAGTACAAATCCTTTTCTTTCGTATTGCAAAAATGCTCTTTCTTCTGGTTCTGGCAAAGGGCGCCTTTGCCCTAGGATATGTGCTTATGGAAGACTTAAGTCGCGCAGTTGGTCAATTTTACCCCTCCTTCTCAGGGGGAATGTCTGGGGGTCAAAAGGGTTCACCTTCCTTGTCGGCGGAGTTTCCATTTCTTCGGATGCCAACTCCTGACTTGAGAGGAATGATCGACGAGCTCGACTTTTCCTCGGCGCCCCTAGTTCCGGAAAGCCAACTCCTAGGGGGGAGCGCACTTCCGGAACCATTGCTCTCTGAAGAGCAGCCTCCGCTGGAAGAATCGGCTTCTTCTAAATGCCCAAGATTTTCTTCCTTTTCCCCAAAAGAATTGGAATCGTTACCCGGAGCTGCGGATCCCTCATCAGGTTTCTCGGAGGCTTCTACCCACCCCGATCGAAAGCCGAGAAGTGCAATTCAAAGAGTGCTTTTGGAGAGGGCTTTAGCAAACGGGGAATCCGATCGACTCCCTTCCTCTGTTTTGACGCTTTTAGACCTCCGGATGACTCCTCTGGTGAAGGGATCATTTTCAAAAGCCGCAATCAAAATGCCAATGACGCTTGTGTTTGCAGGCTGTCGGTGTCTGTCTAGGGACTCTCGGGGCTCAGGTCAAGGAATGAAAGATTTTGGTGAAGGTACTGTAATCTCGGTCAAAGAAATTCTTTTTCTTAGCTTTCTTCCACGCTCTGGCATTCTAATAGAACTCAAAGAGGGCAGGAGGAGCAGGTGGAAAGGGACACAAGTTAACTACCCATACCCAACGCTGCTGGGAAAGGTCCAATCCGATCGCTCCGAAGCTTTCACGGTAGGGTCTCGCTGCTTAAATAATCAATCTTCTTTTCTCGCCACCCGGCTGCGTATCCCCGAAAACTTCCCTCCTAGGACTGTTGTTTCAAGAATCTGA

Network for GWHGAAZE010084

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02874.24	ATP-synt_ab_N	21	88	2.50E-19

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02132	ATPeF1A, ATP5A1, ATP1	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0046034	biological_process	ATP metabolic process
GO:1902600	biological_process	proton transmembrane transport

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.051
	SRR3591706	second leaf	0.170
	SRR3591707	mature leaf	0.064
	SRR3591708	Shoot apex	0.504
	SRR3591709	Stem	0.035
	SRR3591710	White floral bud	0.130
	SRR3591711	White flower	0.011
	SRR3591712	Green floral bud	0.212
	SRR3591713	Yellow flower	0.057
SRP173429	SRR8316895	Juvenile bud stage	4.316
	SRR8316896	Juvenile bud stage	1.862
	SRR8316897	Juvenile bud stage	5.923
	SRR8316894	Third green stage	7.424
	SRR8316900	Third green stage	0.628
	SRR8316901	Third green stage	0.619
	SRR8316898	Complete white stage	2.211
	SRR8316899	Complete white stage	0.057
	SRR8316903	Complete white stage	3.020
	SRR8316902	Silver flowering stage	3.724
	SRR8316904	Silver flowering stage	3.350
	SRR8316905	Silver flowering stage	4.156
	SRR8316906	Gold flowering stage	0.131
	SRR8316907	Gold flowering stage	0.277
	SRR8316908	Gold flowering stage	0.049
SRP132670	SRR6706286	Control	0.168
	SRR6706287	Light intensity 50%	0.341
	SRR6706288	Light intensity 20%	0.270
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	2.340
	CNS0095593	Slightly white alabastrum(diploid) 2	1.318
	CNS0095594	Slightly white alabastrum(diploid) 3	1.518
	CNS0095595	Whole white alabastrum(diploid) 2	3.406
	CNS0095596	Whole white alabastrum(diploid) 3	2.394
	CNS0095597	Whole white alabastrum(diploid) 4	4.456
	CNS0095598	Silvery flower (diploied) 1	2.224
	CNS0095599	Silvery flower (diploied) 2	2.011
	CNS0095600	Silvery flower (diploied) 3	0.690
	CNS0095601	Golden flower (diploid) 1	2.594
	CNS0095602	Golden flower (diploid) 2	0.345
	CNS0095603	Golden flower (diploid) 3	0.613
	CNS0095604	Slightly white alabastrum(tetraploid) 1	1.577
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.726
	CNS0095606	Slightly white alabastrum(tetraploid) 3	0.389
	CNS0095607	Whole white alabastrum(tetraploid) 1	3.034
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.863
	CNS0095609	Whole white alabastrum(tetraploid) 3	0.952
	CNS0095610	Silvery flower (tetraploid) 1	0.588
	CNS0095611	Silvery flower (tetraploid) 2	0.557
	CNS0095612	Silvery flower (tetraploid) 3	0.256
	CNS0095613	Golden flower (tetraploid) 1	2.006
	CNS0095614	Golden flower (tetraploid) 2	0.880
	CNS0095615	Golden flower (tetraploid) 3	0.241
CRA001975	CRR073297	Stem 1	1.204
	CRR073298	Stem 2	1.126
	CRR073299	Stem 3	0.192
	CRR073300	Leaf 1	0.490
	CRR073301	Leaf 2	0.854
	CRR073302	Leaf 3	0.188
	CRR073303	Juvenile bud 1	1.162
	CRR073304	Juvenile bud 2	0.377
	CRR073305	Juvenile bud 3	2.079
	CRR073306	Third green 1	0.849
	CRR073307	Third green 2	0.438
	CRR073308	Third green 3	1.012
	CRR073309	Second white 1	0.815
	CRR073310	Second white 2	1.748
	CRR073311	Second white 3	4.751
	CRR073312	Silver flowering 1	4.036
	CRR073313	Silver flowering 2	1.125
	CRR073314	Silver flowering 3	1.434
	CRR073315	Gold flowering 1	0.408
	CRR073316	Gold flowering 2	0.532
	CRR073317	Gold flowering 3	0.701
	CRR073318	Tawny withering 1	0.604
	CRR073319	Tawny withering 2	0.558
	CRR073320	Tawny withering 3	0.457