Gene detail

Detail information of GWHGAAZE010088

Functional Annotation

Database	Orthologs	Annotation
Nr	BAO50884.1	ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
Swissprot	tr\|P05495\|ATPAM_NICPL	ATP synthase subunit alpha, mitochondrial
trEMBL	tr\|W6JLN6\|W6JLN6_HEVBR	ATP synthase subunit alpha {ECO:0000256\|RuleBase:RU003551}
TAIR10	ATMG01190.1	ATP synthase subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123244043	123245572	+
GWHAAZE00000002	mRNA	123244043	123245572	+
GWHAAZE00000002	exon	123244043	123244608	+
GWHAAZE00000002	exon	123244639	123245572	+
GWHAAZE00000002	CDS	123244043	123244608	+
GWHAAZE00000002	CDS	123244639	123245572	+

Transcript Sequence
>GWHTAAZE010100 ATGGAATTCTCTCCCAGAGCTGCCGAACTAACGACTCTCTTAGAAAGTAGAATTAGCAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATACTGCTATTAAAGAAGGGGATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTTGACGGGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCTGTCCACGAGCCTATGCAAACCGGGTTAAAAGCGGTGGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGCCAAACTGGAAAAACAGCTATTGCTATCGATACCATATTAAACCAAAATGAGACATTATATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTGGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGCGAGGCTTTCCCAGGGGATGTTTTCTATTTACATTCCCGTCTCTTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCCATTACTGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAATTATGAAACAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCCTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTGACAGAAGTACCGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGCTGTCAATGGATTCTGTGATCGAATGCCACTAGACAGAATTTCTCAATATGAGAGAGCCATTCCAAGTAGTATAAAACCAGAATTACTACAATCCCTTTTAGAAAAAGGTGGGTTAACTAACGAAAGAAAGATGGAACCAGATGCATTCTTAAAAGAAAGCGCTTTGCCTTACCTATGA

Network for GWHGAAZE010088

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02874.24	ATP-synt_ab_N	27	94	2.60E-19
PF00006.26	ATP-synt_ab	151	365	2.00E-72
PF00306.28	ATP-synt_ab_C	372	486	1.30E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02132	ATPeF1A, ATP5A1, ATP1	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0015986	biological_process	ATP synthesis coupled proton transport
GO:0046034	biological_process	ATP metabolic process
GO:1902600	biological_process	proton transmembrane transport
GO:0045261	cellular_component	proton-transporting ATP synthase complex, catalytic core F(1)
GO:0005524	molecular_function	ATP binding
GO:0032559	molecular_function	adenyl ribonucleotide binding
GO:0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.357
	SRR3591706	second leaf	0.676
	SRR3591707	mature leaf	0.283
	SRR3591708	Shoot apex	3.112
	SRR3591709	Stem	0.380
	SRR3591710	White floral bud	0.641
	SRR3591711	White flower	0.177
	SRR3591712	Green floral bud	1.150
	SRR3591713	Yellow flower	0.562
SRP173429	SRR8316895	Juvenile bud stage	32.861
	SRR8316896	Juvenile bud stage	18.679
	SRR8316897	Juvenile bud stage	59.387
	SRR8316894	Third green stage	69.619
	SRR8316900	Third green stage	5.462
	SRR8316901	Third green stage	4.352
	SRR8316898	Complete white stage	29.286
	SRR8316899	Complete white stage	0.718
	SRR8316903	Complete white stage	31.843
	SRR8316902	Silver flowering stage	45.796
	SRR8316904	Silver flowering stage	42.744
	SRR8316905	Silver flowering stage	41.447
	SRR8316906	Gold flowering stage	0.634
	SRR8316907	Gold flowering stage	1.062
	SRR8316908	Gold flowering stage	0.540
SRP132670	SRR6706286	Control	2.036
	SRR6706287	Light intensity 50%	3.615
	SRR6706288	Light intensity 20%	2.886
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	20.867
	CNS0095593	Slightly white alabastrum(diploid) 2	15.314
	CNS0095594	Slightly white alabastrum(diploid) 3	20.734
	CNS0095595	Whole white alabastrum(diploid) 2	32.342
	CNS0095596	Whole white alabastrum(diploid) 3	19.279
	CNS0095597	Whole white alabastrum(diploid) 4	39.253
	CNS0095598	Silvery flower (diploied) 1	19.078
	CNS0095599	Silvery flower (diploied) 2	21.602
	CNS0095600	Silvery flower (diploied) 3	8.580
	CNS0095601	Golden flower (diploid) 1	24.783
	CNS0095602	Golden flower (diploid) 2	3.477
	CNS0095603	Golden flower (diploid) 3	7.427
	CNS0095604	Slightly white alabastrum(tetraploid) 1	15.401
	CNS0095605	Slightly white alabastrum(tetraploid) 2	16.026
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.986
	CNS0095607	Whole white alabastrum(tetraploid) 1	23.162
	CNS0095608	Whole white alabastrum(tetraploid) 2	31.641
	CNS0095609	Whole white alabastrum(tetraploid) 3	6.766
	CNS0095610	Silvery flower (tetraploid) 1	4.024
	CNS0095611	Silvery flower (tetraploid) 2	6.168
	CNS0095612	Silvery flower (tetraploid) 3	4.398
	CNS0095613	Golden flower (tetraploid) 1	20.000
	CNS0095614	Golden flower (tetraploid) 2	7.256
	CNS0095615	Golden flower (tetraploid) 3	4.026
CRA001975	CRR073297	Stem 1	10.072
	CRR073298	Stem 2	9.300
	CRR073299	Stem 3	1.628
	CRR073300	Leaf 1	5.351
	CRR073301	Leaf 2	6.677
	CRR073302	Leaf 3	2.851
	CRR073303	Juvenile bud 1	9.479
	CRR073304	Juvenile bud 2	5.342
	CRR073305	Juvenile bud 3	23.398
	CRR073306	Third green 1	9.447
	CRR073307	Third green 2	4.355
	CRR073308	Third green 3	12.413
	CRR073309	Second white 1	10.798
	CRR073310	Second white 2	24.466
	CRR073311	Second white 3	67.262
	CRR073312	Silver flowering 1	50.257
	CRR073313	Silver flowering 2	15.025
	CRR073314	Silver flowering 3	25.167
	CRR073315	Gold flowering 1	3.148
	CRR073316	Gold flowering 2	2.752
	CRR073317	Gold flowering 3	6.517
	CRR073318	Tawny withering 1	9.932
	CRR073319	Tawny withering 2	7.312
	CRR073320	Tawny withering 3	5.816