Detail information of GWHGAAZE010091


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrYP_006291784.10nad5 gene product (mitochondrion) [Daucus carota subsp. sativus]
Swissprottr|P10330|NU5M_OENBE0NADH-ubiquinone oxidoreductase chain 5
trEMBLtr|I1TII4|I1TII4_DAUCA0NADH-ubiquinone oxidoreductase chain 5 {ECO:0000256|RuleBase:RU003404}
TAIR10ATMG00513.10NADH dehydrogenase 5A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123343821123344903+
GWHAAZE00000002mRNA123343821123344903+
GWHAAZE00000002exon123343821123344903+
GWHAAZE00000002CDS123343821123344903+
Transcript Sequence

Network for GWHGAAZE010091

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00361.21Proton_antipo_M92961.30E-78
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03883ND5 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName
GO:0042773biological_processATP synthesis coupled electron transport
GO:0055114biological_processoxidation-reduction process
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.107
SRR3591706second leaf0.209
SRR3591707mature leaf0.292
SRR3591708Shoot apex1.141
SRR3591709Stem0.103
SRR3591710White floral bud0.333
SRR3591711White flower0.360
SRR3591712Green floral bud0.996
SRR3591713Yellow flower0.460
SRP173429 SRR8316895Juvenile bud stage 9.697
SRR8316896Juvenile bud stage 5.545
SRR8316897Juvenile bud stage 18.471
SRR8316894Third green stage 21.686
SRR8316900Third green stage 2.153
SRR8316901Third green stage 1.370
SRR8316898Complete white stage 6.971
SRR8316899Complete white stage 0.072
SRR8316903Complete white stage 8.963
SRR8316902Silver flowering stage13.909
SRR8316904Silver flowering stage14.044
SRR8316905Silver flowering stage12.285
SRR8316906Gold flowering stage 0.139
SRR8316907Gold flowering stage 0.237
SRR8316908Gold flowering stage 0.053
SRP132670SRR6706286Control0.585
SRR6706287Light intensity 50%0.949
SRR6706288Light intensity 20%0.601
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.195
CNS0095593Slightly white alabastrum(diploid) 27.525
CNS0095594Slightly white alabastrum(diploid) 37.882
CNS0095595Whole white alabastrum(diploid) 212.859
CNS0095596Whole white alabastrum(diploid) 39.275
CNS0095597Whole white alabastrum(diploid) 413.209
CNS0095598Silvery flower (diploied) 16.094
CNS0095599Silvery flower (diploied) 210.448
CNS0095600Silvery flower (diploied) 33.624
CNS0095601Golden flower (diploid) 18.330
CNS0095602Golden flower (diploid) 22.373
CNS0095603Golden flower (diploid) 33.994
CNS0095604Slightly white alabastrum(tetraploid) 17.288
CNS0095605Slightly white alabastrum(tetraploid) 27.290
CNS0095606Slightly white alabastrum(tetraploid) 31.709
CNS0095607Whole white alabastrum(tetraploid) 111.263
CNS0095608Whole white alabastrum(tetraploid) 212.470
CNS0095609Whole white alabastrum(tetraploid) 33.302
CNS0095610Silvery flower (tetraploid) 11.890
CNS0095611Silvery flower (tetraploid) 22.460
CNS0095612Silvery flower (tetraploid) 31.522
CNS0095613Golden flower (tetraploid) 19.595
CNS0095614Golden flower (tetraploid) 22.908
CNS0095615Golden flower (tetraploid) 32.747
CRA001975CRR073297Stem 15.199
CRR073298Stem 24.341
CRR073299Stem 30.372
CRR073300Leaf 12.047
CRR073301Leaf 22.511
CRR073302Leaf 30.821
CRR073303Juvenile bud 11.762
CRR073304Juvenile bud 21.897
CRR073305Juvenile bud 38.463
CRR073306Third green 11.850
CRR073307Third green 21.653
CRR073308Third green 34.216
CRR073309Second white 14.973
CRR073310Second white 26.998
CRR073311Second white 324.142
CRR073312Silver flowering 111.436
CRR073313Silver flowering 23.131
CRR073314Silver flowering 38.761
CRR073315Gold flowering 11.988
CRR073316Gold flowering 21.010
CRR073317Gold flowering 32.273
CRR073318Tawny withering 12.700
CRR073319Tawny withering 21.813
CRR073320Tawny withering 30.890