Detail information of GWHGAAZE010109


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAEG80479.10NADH dehydrogenase subunit 5, partial (mitochondrion) [Garrya elliptica]
Swissprottr|Q37680|NU5M_WHEAT1E-176NADH-ubiquinone oxidoreductase chain 5
trEMBLtr|F8S088|F8S088_GAREL0NADH-ubiquinone oxidoreductase chain 5 {ECO:0000256|RuleBase:RU003404} (Fragment)
TAIR10ATMG00513.12E-125NADH dehydrogenase 5A

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123577645123579592-
GWHAAZE00000002mRNA123577645123579592-
GWHAAZE00000002exon123579480123579592-
GWHAAZE00000002exon123579006123579126-
GWHAAZE00000002exon123578166123578615-
GWHAAZE00000002exon123577645123578091-
GWHAAZE00000002CDS123579480123579592-
GWHAAZE00000002CDS123579006123579126-
GWHAAZE00000002CDS123578166123578615-
GWHAAZE00000002CDS123577645123578091-
Transcript Sequence

Network for GWHGAAZE010109

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0034


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00361.21Proton_antipo_M752301.10E-33
PF00361.21Proton_antipo_M2373124.50E-11
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K03883ND5 Metabolic pathways map01100
Oxidative phosphorylationmap00190
Retrograde endocannabinoid signalingmap04723
Thermogenesismap04714

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.181
SRR3591706second leaf0.207
SRR3591707mature leaf0.417
SRR3591708Shoot apex1.165
SRR3591709Stem0.386
SRR3591710White floral bud0.694
SRR3591711White flower0.634
SRR3591712Green floral bud1.361
SRR3591713Yellow flower0.360
SRP173429 SRR8316895Juvenile bud stage 5.576
SRR8316896Juvenile bud stage 2.830
SRR8316897Juvenile bud stage 9.639
SRR8316894Third green stage 11.170
SRR8316900Third green stage 1.377
SRR8316901Third green stage 1.137
SRR8316898Complete white stage 4.316
SRR8316899Complete white stage 0.584
SRR8316903Complete white stage 4.929
SRR8316902Silver flowering stage6.156
SRR8316904Silver flowering stage7.240
SRR8316905Silver flowering stage5.998
SRR8316906Gold flowering stage 0.344
SRR8316907Gold flowering stage 0.771
SRR8316908Gold flowering stage 0.471
SRP132670SRR6706286Control0.692
SRR6706287Light intensity 50%1.159
SRR6706288Light intensity 20%0.917
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.059
CNS0095593Slightly white alabastrum(diploid) 212.283
CNS0095594Slightly white alabastrum(diploid) 313.693
CNS0095595Whole white alabastrum(diploid) 212.680
CNS0095596Whole white alabastrum(diploid) 310.683
CNS0095597Whole white alabastrum(diploid) 416.470
CNS0095598Silvery flower (diploied) 16.076
CNS0095599Silvery flower (diploied) 27.140
CNS0095600Silvery flower (diploied) 32.581
CNS0095601Golden flower (diploid) 17.220
CNS0095602Golden flower (diploid) 22.192
CNS0095603Golden flower (diploid) 32.742
CNS0095604Slightly white alabastrum(tetraploid) 18.585
CNS0095605Slightly white alabastrum(tetraploid) 210.958
CNS0095606Slightly white alabastrum(tetraploid) 34.718
CNS0095607Whole white alabastrum(tetraploid) 114.138
CNS0095608Whole white alabastrum(tetraploid) 216.546
CNS0095609Whole white alabastrum(tetraploid) 34.331
CNS0095610Silvery flower (tetraploid) 11.293
CNS0095611Silvery flower (tetraploid) 22.264
CNS0095612Silvery flower (tetraploid) 31.647
CNS0095613Golden flower (tetraploid) 15.009
CNS0095614Golden flower (tetraploid) 21.748
CNS0095615Golden flower (tetraploid) 31.997
CRA001975CRR073297Stem 12.898
CRR073298Stem 22.655
CRR073299Stem 31.555
CRR073300Leaf 12.421
CRR073301Leaf 21.791
CRR073302Leaf 33.722
CRR073303Juvenile bud 13.673
CRR073304Juvenile bud 22.455
CRR073305Juvenile bud 35.882
CRR073306Third green 12.457
CRR073307Third green 22.633
CRR073308Third green 33.348
CRR073309Second white 13.401
CRR073310Second white 24.200
CRR073311Second white 39.409
CRR073312Silver flowering 14.831
CRR073313Silver flowering 22.405
CRR073314Silver flowering 32.864
CRR073315Gold flowering 11.204
CRR073316Gold flowering 20.588
CRR073317Gold flowering 31.715
CRR073318Tawny withering 12.322
CRR073319Tawny withering 22.621
CRR073320Tawny withering 31.453