Gene detail

Detail information of GWHGAAZE010112

Functional Annotation

Database	Orthologs	Annotation
Nr	BAO50884.1	ATP synthase F1 subunit 1 (mitochondrion) [Hevea brasiliensis]
Swissprot	tr\|P05495\|ATPAM_NICPL	ATP synthase subunit alpha, mitochondrial
trEMBL	tr\|W6JLN6\|W6JLN6_HEVBR	ATP synthase subunit alpha {ECO:0000256\|RuleBase:RU003551}
TAIR10	ATMG01190.1	ATP synthase subunit 1

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123676398	123678566	-
GWHAAZE00000002	mRNA	123676398	123678566	-
GWHAAZE00000002	exon	123676398	123676859	-
GWHAAZE00000002	exon	123677112	123678566	-
GWHAAZE00000002	CDS	123677112	123678566	-
GWHAAZE00000002	CDS	123676398	123676859	-

Transcript Sequence
>GWHTAAZE010124 ATGGAATTCTCTCCCAGAGCTGCCGAACTAACGACTCTCTTAGAAAGTAGAATTAGCAACTTTTACACGAATTTTCAAGTGGATGAGATCGGTCGAGTGGTCTCAGTTGGAGATGGGATTGCACGTGTTTATGGATTGAACGAGATTCAAGCTGGGGAAATGGTTGAATTTGCCAGCGGTGTGAAAGGAATAGCCTTGAATCTTGAGAATGAGAATGTAGGGATTGTTGTCTTTGGTAGTGATACTGCTATTAAAGAAGGGGATCTTGTCAAGCGCACTGGATCTATTGTGGATGTTCCTGCGGGAAAGGCTATGCTAGGGCGTGTGGTTGACGGGTTGGGAGTACCTATTGATGGAAGAGGGGCTCTAAGCGATCACGAGCGAAGACGTGTCGAAGTGAAAGCCCCTGGGATTATTGAACGTAAATCTGTCCACGAGCCTATGCAAACCGGGTTAAAAGCGGTGGATAGCCTGGTTCCTATAGGCCGTGGTCAACGAGAACTTATAATCGGGGACCGCCAAACTGGAAAAACAGCTATTGCTATCGATACCATATTAAACCAAAAGCAAATGAACTCAAGGAGCACCTCTGAGAGTGAGACATTATATTGTGTCTATGTAGCGATTGGACAGAAACGCTCAACTGTGGCACAATTAGTTCAAATTCTTTCAGAAGCGAATGCTTTGGAATATTCCATTCTTGTAGCAGCCACCGCTTCGGATCCTGCTCCTCTGCAATTTCTGGCCCCATATTCTGGGTGTGCCATGGGGGAATATTTCCGCGATAATGGAATGCACGCATTAATAATCTATGATGATCTTAGTAAACAGGCGGTGGCATATCGACAAATGTCATTATTGTTACGCCGACCACCAGGCCGCGAGGCTTTCCAGGGATGTTTTCTATTTACATTCCCGTCTCTAGAAAGAGCCGCTAAACGATCGGACCAGACAGGCGCAGGTAGCTTGACCGCCTTACCCGTCATTGAAACACAAGCTGGAGACGTATCGGCCTATATTCCCACCAATGTGATCTCCATTACTGATGGACAAATCTGTTTGGAAACAGAGCTCTTTTATCGCGGAATTAGACCTGCTATTAACGTCGGCTTATCTGTCAGTCGCGTCGGGTCTGCCGCTCAGTTGAAAATTATGAAACAAGTCTGCGGTAGTTCAAAACTGGAATTGGCACAATATCGCGAAGTGGCCGCCCTTGCTCAATTTGGGTCAGACCTTGATGCTGCGACTCAGGCATTACTCAATAGAGGTGCAAGGCTGACAGAAGTACCGAAACAACCACAATATGCACCACTTCCAATTGAAAAACAAATTCTAGTCATTTATGCAGCTGTCAATGGATTCTGTGATCGAATGCCACTAGACAGAATTTCTCAATATGAGAGAGCCATTCCAAGTAGTATAAAACCAGAATTACTACAATCCCTTTTAGAAAAGAATTCCTCTTCCCGTCGGAGGGCTAGTTCTTCGAAGCAACTTGAATTTGACCTCAATCTGCCCGCATCTGAAGAAGATCCAGGGGAGCCGGACGAAATCGAAAAAGCACTGACAAAAGCGGAATTGGACAAGATTCGCGAGCAAAAGGATGAATTGGCCGAAGAGATTCGCCCTCTTATTGAAGAGGCGAAGGCACGCCTGTGTCAAAAATTCCCGGACCGCGACTTGGGTGAACTTCCGGAAGCAAGGGAAATGGTAGAAATGATTATAAACCGCTTCGCCAGCGACGGTGCCCGTAATGCCAACAAACCCAATGCCCCCAAGGCTCATTTAAAGGTCTTGAAGACTTGGTTGACACGAGCACAACAATCGGCGAAGGGGAGGGAAAGGAAAGATGTCAGTAGAAAATCAGATTTCATCGATAATTTACAAATATTTCGAGTAGCTTTGCCTTACCTATGA

Network for GWHGAAZE010112

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF02874.24	ATP-synt_ab_N	27	94	3.60E-19
PF00006.26	ATP-synt_ab	151	374	3.70E-65
PF00306.28	ATP-synt_ab_C	381	485	5.30E-35

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02132	ATPeF1A, ATP5A1, ATP1	Metabolic pathways	map01100
		Oxidative phosphorylation	map00190
		Thermogenesis	map04714

Gene Ontology

GO term	Ontology	Name
GO:0015986	biological_process	ATP synthesis coupled proton transport
GO:0046034	biological_process	ATP metabolic process
GO:1902600	biological_process	proton transmembrane transport
GO:0045261	cellular_component	proton-transporting ATP synthase complex, catalytic core F(1)
GO:0005524	molecular_function	ATP binding
GO:0046933	molecular_function	proton-transporting ATP synthase activity, rotational mechanism
GO:0032559	molecular_function	adenyl ribonucleotide binding

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.224
	SRR3591706	second leaf	0.407
	SRR3591707	mature leaf	0.214
	SRR3591708	Shoot apex	2.072
	SRR3591709	Stem	0.298
	SRR3591710	White floral bud	0.371
	SRR3591711	White flower	0.259
	SRR3591712	Green floral bud	0.719
	SRR3591713	Yellow flower	0.710
SRP173429	SRR8316895	Juvenile bud stage	18.659
	SRR8316896	Juvenile bud stage	9.108
	SRR8316897	Juvenile bud stage	30.363
	SRR8316894	Third green stage	33.552
	SRR8316900	Third green stage	2.887
	SRR8316901	Third green stage	2.979
	SRR8316898	Complete white stage	16.697
	SRR8316899	Complete white stage	0.215
	SRR8316903	Complete white stage	17.201
	SRR8316902	Silver flowering stage	23.396
	SRR8316904	Silver flowering stage	22.123
	SRR8316905	Silver flowering stage	22.477
	SRR8316906	Gold flowering stage	0.284
	SRR8316907	Gold flowering stage	0.543
	SRR8316908	Gold flowering stage	0.446
SRP132670	SRR6706286	Control	1.316
	SRR6706287	Light intensity 50%	1.888
	SRR6706288	Light intensity 20%	1.368
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	13.490
	CNS0095593	Slightly white alabastrum(diploid) 2	10.267
	CNS0095594	Slightly white alabastrum(diploid) 3	12.211
	CNS0095595	Whole white alabastrum(diploid) 2	19.262
	CNS0095596	Whole white alabastrum(diploid) 3	12.849
	CNS0095597	Whole white alabastrum(diploid) 4	21.987
	CNS0095598	Silvery flower (diploied) 1	12.606
	CNS0095599	Silvery flower (diploied) 2	14.859
	CNS0095600	Silvery flower (diploied) 3	5.366
	CNS0095601	Golden flower (diploid) 1	17.585
	CNS0095602	Golden flower (diploid) 2	2.163
	CNS0095603	Golden flower (diploid) 3	4.384
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.870
	CNS0095605	Slightly white alabastrum(tetraploid) 2	10.761
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.848
	CNS0095607	Whole white alabastrum(tetraploid) 1	15.208
	CNS0095608	Whole white alabastrum(tetraploid) 2	18.686
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.945
	CNS0095610	Silvery flower (tetraploid) 1	2.766
	CNS0095611	Silvery flower (tetraploid) 2	3.149
	CNS0095612	Silvery flower (tetraploid) 3	2.760
	CNS0095613	Golden flower (tetraploid) 1	13.773
	CNS0095614	Golden flower (tetraploid) 2	4.710
	CNS0095615	Golden flower (tetraploid) 3	1.812
CRA001975	CRR073297	Stem 1	8.372
	CRR073298	Stem 2	7.370
	CRR073299	Stem 3	1.278
	CRR073300	Leaf 1	4.091
	CRR073301	Leaf 2	5.640
	CRR073302	Leaf 3	3.248
	CRR073303	Juvenile bud 1	8.217
	CRR073304	Juvenile bud 2	4.421
	CRR073305	Juvenile bud 3	19.826
	CRR073306	Third green 1	8.113
	CRR073307	Third green 2	4.239
	CRR073308	Third green 3	10.718
	CRR073309	Second white 1	6.171
	CRR073310	Second white 2	16.038
	CRR073311	Second white 3	44.757
	CRR073312	Silver flowering 1	33.352
	CRR073313	Silver flowering 2	8.805
	CRR073314	Silver flowering 3	15.601
	CRR073315	Gold flowering 1	3.290
	CRR073316	Gold flowering 2	2.310
	CRR073317	Gold flowering 3	4.762
	CRR073318	Tawny withering 1	5.704
	CRR073319	Tawny withering 2	5.075
	CRR073320	Tawny withering 3	3.386