Detail information of GWHGAAZE010115


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD31495.18.18465E-82ATP synthase CF1 alpha subunit protein (chloroplast) [Lonicera japonica]
Swissprottr|Q1KXW5|ATPA_HELAN2E-82ATP synthase subunit alpha, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01346}
trEMBLtr|D3WBM6|D3WBM6_LONJA3E-82ATP synthase subunit alpha, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01346, ECO:0000256|RuleBase:RU004286}
TAIR10ATCG00120.12E-65ATP synthase subunit alpha

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123685170123687746-
GWHAAZE00000002mRNA123685170123687746-
GWHAAZE00000002exon123687596123687746-
GWHAAZE00000002exon123685617123685685-
GWHAAZE00000002exon123685170123685540-
GWHAAZE00000002CDS123687596123687746-
GWHAAZE00000002CDS123685617123685685-
GWHAAZE00000002CDS123685170123685540-
Transcript Sequence

Network for GWHGAAZE010115

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00137.22ATP-synt_C11453.80E-09
PF00006.26ATP-synt_ab1391912.00E-07
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02111ATPF1A, atpA Metabolic pathways map01100
Oxidative phosphorylationmap00190
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0046034biological_processATP metabolic process
GO:1902600biological_processproton transmembrane transport
GO:0015986biological_processATP synthesis coupled proton transport
GO:0045263cellular_componentproton-transporting ATP synthase complex, coupling factor F(o)
GO:0033177cellular_componentproton-transporting two-sector ATPase complex, proton-transporting domain
GO:0015078molecular_functionproton transmembrane transporter activity
GO:0005524molecular_functionATP binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf1.660
SRR3591706second leaf9.772
SRR3591707mature leaf9.628
SRR3591708Shoot apex4.034
SRR3591709Stem1.405
SRR3591710White floral bud0.552
SRR3591711White flower0.755
SRR3591712Green floral bud0.800
SRR3591713Yellow flower0.686
SRP173429 SRR8316895Juvenile bud stage 11.289
SRR8316896Juvenile bud stage 5.099
SRR8316897Juvenile bud stage 14.363
SRR8316894Third green stage 11.828
SRR8316900Third green stage 2.606
SRR8316901Third green stage 1.825
SRR8316898Complete white stage 4.388
SRR8316899Complete white stage 1.336
SRR8316903Complete white stage 4.340
SRR8316902Silver flowering stage8.214
SRR8316904Silver flowering stage5.145
SRR8316905Silver flowering stage6.262
SRR8316906Gold flowering stage 1.655
SRR8316907Gold flowering stage 0.441
SRR8316908Gold flowering stage 0.673
SRP132670SRR6706286Control0.260
SRR6706287Light intensity 50%0.386
SRR6706288Light intensity 20%0.431
CNP0000432CNS0095592Slightly white alabastrum(diploid) 113.985
CNS0095593Slightly white alabastrum(diploid) 29.016
CNS0095594Slightly white alabastrum(diploid) 312.075
CNS0095595Whole white alabastrum(diploid) 210.284
CNS0095596Whole white alabastrum(diploid) 36.423
CNS0095597Whole white alabastrum(diploid) 410.091
CNS0095598Silvery flower (diploied) 17.025
CNS0095599Silvery flower (diploied) 26.022
CNS0095600Silvery flower (diploied) 33.161
CNS0095601Golden flower (diploid) 17.954
CNS0095602Golden flower (diploid) 22.693
CNS0095603Golden flower (diploid) 32.609
CNS0095604Slightly white alabastrum(tetraploid) 18.927
CNS0095605Slightly white alabastrum(tetraploid) 29.038
CNS0095606Slightly white alabastrum(tetraploid) 36.406
CNS0095607Whole white alabastrum(tetraploid) 17.770
CNS0095608Whole white alabastrum(tetraploid) 29.068
CNS0095609Whole white alabastrum(tetraploid) 36.266
CNS0095610Silvery flower (tetraploid) 13.033
CNS0095611Silvery flower (tetraploid) 24.311
CNS0095612Silvery flower (tetraploid) 33.031
CNS0095613Golden flower (tetraploid) 13.345
CNS0095614Golden flower (tetraploid) 23.163
CNS0095615Golden flower (tetraploid) 32.901
CRA001975CRR073297Stem 16.954
CRR073298Stem 26.947
CRR073299Stem 33.269
CRR073300Leaf 12.690
CRR073301Leaf 22.593
CRR073302Leaf 31.085
CRR073303Juvenile bud 13.703
CRR073304Juvenile bud 22.242
CRR073305Juvenile bud 34.758
CRR073306Third green 13.352
CRR073307Third green 21.435
CRR073308Third green 33.499
CRR073309Second white 13.708
CRR073310Second white 29.901
CRR073311Second white 314.948
CRR073312Silver flowering 110.743
CRR073313Silver flowering 23.000
CRR073314Silver flowering 35.591
CRR073315Gold flowering 121.700
CRR073316Gold flowering 221.137
CRR073317Gold flowering 322.910
CRR073318Tawny withering 12.590
CRR073319Tawny withering 22.357
CRR073320Tawny withering 33.131