Detail information of GWHGAAZE010121


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD30821.10photosystem I P700 apoprotein A1 (chloroplast) [Lonicera japonica]
Swissprottr|Q68S06|PSAA_PANGI0Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000255|HAMAP-Rule:MF_00458}
trEMBLtr|D3WBQ4|D3WBQ4_LONJA0Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000256|HAMAP-Rule:MF_00458}
TAIR10ATCG00350.10Photosystem I, PsaA/PsaB protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123712370123716901-
GWHAAZE00000002mRNA123712370123716901-
GWHAAZE00000002exon123714889123716901-
GWHAAZE00000002exon123714204123714592-
GWHAAZE00000002exon123714023123714117-
GWHAAZE00000002exon123712966123713891-
GWHAAZE00000002exon123712370123712558-
GWHAAZE00000002CDS123714889123716901-
GWHAAZE00000002CDS123714204123714592-
GWHAAZE00000002CDS123714023123714117-
GWHAAZE00000002CDS123712966123713891-
GWHAAZE00000002CDS123712370123712558-
Transcript Sequence

Network for GWHGAAZE010121

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00223.20PsaA_PsaB486710
PF00223.20PsaA_PsaB6858062.60E-50
PF00223.20PsaA_PsaB82711411.10E-136
PF00223.20PsaA_PsaB114111969.40E-19
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02689psaA Metabolic pathways map01100
Photosynthesismap00195

Gene Ontology

GO term OntologyName
GO:0015979biological_processphotosynthesis
GO:0009522cellular_componentphotosystem I
GO:0009579cellular_componentthylakoid
GO:0016021cellular_componentintegral component of membrane
GO:0046872molecular_functionmetal ion binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.535
SRR3591706second leaf2.369
SRR3591707mature leaf2.258
SRR3591708Shoot apex4.624
SRR3591709Stem0.681
SRR3591710White floral bud0.375
SRR3591711White flower0.520
SRR3591712Green floral bud0.568
SRR3591713Yellow flower0.655
SRP173429 SRR8316895Juvenile bud stage 25.686
SRR8316896Juvenile bud stage 10.428
SRR8316897Juvenile bud stage 34.101
SRR8316894Third green stage 37.152
SRR8316900Third green stage 2.634
SRR8316901Third green stage 2.123
SRR8316898Complete white stage 7.754
SRR8316899Complete white stage 0.473
SRR8316903Complete white stage 9.630
SRR8316902Silver flowering stage13.716
SRR8316904Silver flowering stage13.230
SRR8316905Silver flowering stage12.159
SRR8316906Gold flowering stage 0.427
SRR8316907Gold flowering stage 0.357
SRR8316908Gold flowering stage 0.336
SRP132670SRR6706286Control0.769
SRR6706287Light intensity 50%0.846
SRR6706288Light intensity 20%0.572
CNP0000432CNS0095592Slightly white alabastrum(diploid) 110.873
CNS0095593Slightly white alabastrum(diploid) 26.964
CNS0095594Slightly white alabastrum(diploid) 39.052
CNS0095595Whole white alabastrum(diploid) 212.641
CNS0095596Whole white alabastrum(diploid) 37.909
CNS0095597Whole white alabastrum(diploid) 410.227
CNS0095598Silvery flower (diploied) 19.270
CNS0095599Silvery flower (diploied) 211.341
CNS0095600Silvery flower (diploied) 34.876
CNS0095601Golden flower (diploid) 111.937
CNS0095602Golden flower (diploid) 23.566
CNS0095603Golden flower (diploid) 34.729
CNS0095604Slightly white alabastrum(tetraploid) 111.148
CNS0095605Slightly white alabastrum(tetraploid) 210.814
CNS0095606Slightly white alabastrum(tetraploid) 33.295
CNS0095607Whole white alabastrum(tetraploid) 18.558
CNS0095608Whole white alabastrum(tetraploid) 211.807
CNS0095609Whole white alabastrum(tetraploid) 33.446
CNS0095610Silvery flower (tetraploid) 13.477
CNS0095611Silvery flower (tetraploid) 24.987
CNS0095612Silvery flower (tetraploid) 33.055
CNS0095613Golden flower (tetraploid) 17.934
CNS0095614Golden flower (tetraploid) 23.564
CNS0095615Golden flower (tetraploid) 31.870
CRA001975CRR073297Stem 16.730
CRR073298Stem 28.483
CRR073299Stem 32.579
CRR073300Leaf 11.821
CRR073301Leaf 22.353
CRR073302Leaf 31.893
CRR073303Juvenile bud 15.326
CRR073304Juvenile bud 23.440
CRR073305Juvenile bud 39.812
CRR073306Third green 14.494
CRR073307Third green 22.361
CRR073308Third green 35.205
CRR073309Second white 17.335
CRR073310Second white 217.656
CRR073311Second white 347.886
CRR073312Silver flowering 134.914
CRR073313Silver flowering 27.750
CRR073314Silver flowering 319.902
CRR073315Gold flowering 130.472
CRR073316Gold flowering 228.924
CRR073317Gold flowering 347.956
CRR073318Tawny withering 16.191
CRR073319Tawny withering 24.220
CRR073320Tawny withering 34.488