Detail information of GWHGAAZE010124


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrXP_006841199.11.2785E-150hypothetical protein AMTR_s00334p00014280 [Amborella trichopoda]
Swissprottr|Q49KZ4|NDHK_EUCGG9E-87NAD(P)H-quinone oxidoreductase subunit K, chloroplastic {ECO:0000255|HAMAP-Rule:MF_01356}
trEMBLtr|W1P5D9|W1P5D9_AMBTC5E-151Uncharacterized protein {ECO:0000313|EMBL:ERN02874.1}
TAIR10ATCG00430.16E-64photosystem II reaction center protein G

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123723969123724976-
GWHAAZE00000002mRNA123723969123724976-
GWHAAZE00000002exon123723969123724267-
GWHAAZE00000002exon123724577123724976-
GWHAAZE00000002CDS123724577123724976-
GWHAAZE00000002CDS123723969123724267-
Transcript Sequence

Network for GWHGAAZE010124

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF01058.23Oxidored_q63717.20E-19
PF00329.20Complex1_30kDa1392222.70E-27
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K05582ndhK Metabolic pathways map01100
Oxidative phosphorylationmap00190

Gene Ontology

GO term OntologyName
GO:0055114biological_processoxidation-reduction process
GO:0016651molecular_functionoxidoreductase activity, acting on NAD(P)H
GO:0008137molecular_functionNADH dehydrogenase (ubiquinone) activity
GO:0048038molecular_functionquinone binding
GO:0051539molecular_function4 iron, 4 sulfur cluster binding
GO:0051536molecular_functioniron-sulfur cluster binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.911
SRR3591706second leaf2.367
SRR3591707mature leaf3.604
SRR3591708Shoot apex1.479
SRR3591709Stem0.557
SRR3591710White floral bud0.207
SRR3591711White flower0.223
SRR3591712Green floral bud0.276
SRR3591713Yellow flower0.377
SRP173429 SRR8316895Juvenile bud stage 5.830
SRR8316896Juvenile bud stage 2.363
SRR8316897Juvenile bud stage 8.011
SRR8316894Third green stage 7.279
SRR8316900Third green stage 1.425
SRR8316901Third green stage 1.175
SRR8316898Complete white stage 4.704
SRR8316899Complete white stage 0.716
SRR8316903Complete white stage 2.452
SRR8316902Silver flowering stage5.799
SRR8316904Silver flowering stage4.836
SRR8316905Silver flowering stage4.587
SRR8316906Gold flowering stage 0.936
SRR8316907Gold flowering stage 0.809
SRR8316908Gold flowering stage 0.715
SRP132670SRR6706286Control0.250
SRR6706287Light intensity 50%0.326
SRR6706288Light intensity 20%0.227
CNP0000432CNS0095592Slightly white alabastrum(diploid) 13.048
CNS0095593Slightly white alabastrum(diploid) 21.427
CNS0095594Slightly white alabastrum(diploid) 32.994
CNS0095595Whole white alabastrum(diploid) 23.411
CNS0095596Whole white alabastrum(diploid) 33.449
CNS0095597Whole white alabastrum(diploid) 42.304
CNS0095598Silvery flower (diploied) 12.042
CNS0095599Silvery flower (diploied) 24.165
CNS0095600Silvery flower (diploied) 31.652
CNS0095601Golden flower (diploid) 12.813
CNS0095602Golden flower (diploid) 21.728
CNS0095603Golden flower (diploid) 30.870
CNS0095604Slightly white alabastrum(tetraploid) 13.927
CNS0095605Slightly white alabastrum(tetraploid) 24.240
CNS0095606Slightly white alabastrum(tetraploid) 31.847
CNS0095607Whole white alabastrum(tetraploid) 12.791
CNS0095608Whole white alabastrum(tetraploid) 22.787
CNS0095609Whole white alabastrum(tetraploid) 31.412
CNS0095610Silvery flower (tetraploid) 10.886
CNS0095611Silvery flower (tetraploid) 21.083
CNS0095612Silvery flower (tetraploid) 31.113
CNS0095613Golden flower (tetraploid) 12.319
CNS0095614Golden flower (tetraploid) 21.336
CNS0095615Golden flower (tetraploid) 30.910
CRA001975CRR073297Stem 12.018
CRR073298Stem 22.308
CRR073299Stem 31.110
CRR073300Leaf 11.145
CRR073301Leaf 21.300
CRR073302Leaf 31.542
CRR073303Juvenile bud 12.166
CRR073304Juvenile bud 21.780
CRR073305Juvenile bud 33.534
CRR073306Third green 13.041
CRR073307Third green 22.744
CRR073308Third green 33.435
CRR073309Second white 15.924
CRR073310Second white 27.993
CRR073311Second white 310.918
CRR073312Silver flowering 18.096
CRR073313Silver flowering 21.749
CRR073314Silver flowering 32.163
CRR073315Gold flowering 149.146
CRR073316Gold flowering 233.137
CRR073317Gold flowering 338.799
CRR073318Tawny withering 13.409
CRR073319Tawny withering 21.508
CRR073320Tawny withering 32.902