Gene detail

Detail information of GWHGAAZE010128

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	YP_004935561.1	5.4422E-111	acetyl-CoA carboxylase beta subunit (chloroplast) [Eleutherococcus senticosus]
Swissprot	tr\|P12219\|ACCD_TOBAC	9E-113	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic {ECO:0000255\|HAMAP-Rule:MF_01395}
trEMBL	tr\|G9IAY4\|G9IAY4_9APIA	2E-111	Acetyl-coenzyme A carboxylase carboxyl transferase subunit beta, chloroplastic {ECO:0000256\|HAMAP-Rule:MF_01395}
TAIR10	ATCG00500.1	2E-68	acetyl-CoA carboxylase carboxyl transferase subunit beta

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123733257	123734923	+
GWHAAZE00000002	mRNA	123733257	123734923	+
GWHAAZE00000002	exon	123733257	123733729	+
GWHAAZE00000002	exon	123733819	123734923	+
GWHAAZE00000002	CDS	123733257	123733729	+
GWHAAZE00000002	CDS	123733819	123734923	+

Transcript Sequence
>GWHTAAZE010140 ATGGTTCGCGCTCGACTATATAAATATTTTCCTCGACTATATAAAGATTTTCCGAAGGGCCACCCTTACACTACAGACGATCCCGAAAAGAAAATAAAATTTGAGGAGGAGGTTCAATCTATACTAGCGAGTTATGAGAACGGTGACTTTCGCTTTATAGTTGATCCTGAGGAGAAACTTAAGGAGGAGGTTCGCCTTGAGATAAAGGAATTAAAGGATAAATATTTTCCGAAGGATGACCCAAGCGCTCAAAACGATAGGGAGAAGATAGACAACTTTTTTAACGAGGCTTCCCATATAGTAAAGAGCTATAGGGAGGCTTTCTCTATAGTAGAGAGATATCCGACGGACCCTAGCTATGGAGGTGATCCTCAGAAGGATGCCCCTAGCTATGGGGGTGATCCTCAGGAGGATGACTCTGACTCTGGGGTGATACGGACGATGGAAGTGATACGGACGGCCCTGACTCTGGGGGATACGGACGATGGAAGGGATACGGATGGCCCTGACTATGGAAGTGATCCGAATGGCCACTTCTATGAAAGTGATCCGGATGGCCCTGACTATGGAAGTGATCCGAATGGCCACTTCTATGGAAGTGATCCGAATGGCCACTTCTATGAAAGTGATCCGGATGGCCACTTCTATGAAAGTGATCCGGAGGATTCCCTTCAAAAAAAAAGAAATCTTGGGGGGGATTACCTTCAAATAGATAGATATCCCGAGGATACTCGCTTTAAAATAGAAAGAGATCCTGAGAAGATAGATAGATATATTGAGGAGCCCTTCCTTGACTATGGGGGTGATCCTCAGGAGGATGACCCTAGCTATGGGGGTGATCCTCAGGAGGATGACCCTAGCTATGGAGGTGATCCTCGGGAGGATGACTCTGACTCTGGAAGTGATCCTAATCCTAGGAAGAATTACACTCACAAATACAAGCATTTGTGGCTTATGTGCGATGAGTGTTATACATTAAATTATAGGAGATTTTTGAAAGAAAGATTGTATATTTGTGAAGGATGTGGATTTCATTTGAAAATGAATAGTTCAGAGAGACTCAAACTTTTGATCGATCCGGATACTTGGGATCCTATGAATGAAAAGATGGCCTCTCTGGATCCCATTGAATTTCATTCGGAGGAGGATCCTTATATAGATCGTGTCAATTCTTATCGAAAAAAGACAGGATTAACTGAGGCTATTCAAACCGGCCTATGCCAATTAAATGGTATTCCCACAGCAATGGGGGTTATGGAGTTTGGGTTTATGGGGGGTAGTATGGGATCCGTAGTCGGGGAGAAAATAACCCGTTTGGTTGAGTATGCCACTAATCAAGCTCTACCTCTTATTATAGTGTGTGCTTCCGGGGCACGCATGCAAGAAGGAAGTTTGAGCTTGATGCAAATGGCTAAAATATCTTCTTCTTTATATGATTTTCAAACAAAGAAAAAGTTATTCTATGTATCAATCCTTACATCTCCTACTACCGGTGGGGTGACAGCCAGTTTTGGTATGTTGGGGATGTCATTGTTGCCGAACCCGATGCCTATATTGCATTTGCGGGTAAAAGGGTAA

Network for GWHGAAZE010128

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation
CFinderModule0052

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF01039.23	Carboxyl_trans	373	499	7.20E-10

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K01963	accD	Metabolic pathways	map01100
		Biosynthesis of secondary metabolites	map01110
		Microbial metabolism in diverse environments	map01120
		Carbon metabolism	map01200
		Fatty acid metabolism	map01212
		Pyruvate metabolism	map00620
		Propanoate metabolism	map00640
		Carbon fixation pathways in prokaryotes	map00720
		Fatty acid biosynthesis	map00061

Gene Ontology

GO term	Ontology	Name
GO:0006633	biological_process	fatty acid biosynthetic process
GO:0009317	cellular_component	acetyl-CoA carboxylase complex
GO:0003989	molecular_function	acetyl-CoA carboxylase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.501
	SRR3591706	second leaf	0.178
	SRR3591707	mature leaf	0.090
	SRR3591708	Shoot apex	0.774
	SRR3591709	Stem	0.144
	SRR3591710	White floral bud	0.532
	SRR3591711	White flower	0.528
	SRR3591712	Green floral bud	0.838
	SRR3591713	Yellow flower	0.931
SRP173429	SRR8316895	Juvenile bud stage	4.581
	SRR8316896	Juvenile bud stage	4.193
	SRR8316897	Juvenile bud stage	9.257
	SRR8316894	Third green stage	8.136
	SRR8316900	Third green stage	3.538
	SRR8316901	Third green stage	1.882
	SRR8316898	Complete white stage	2.283
	SRR8316899	Complete white stage	0.632
	SRR8316903	Complete white stage	2.036
	SRR8316902	Silver flowering stage	4.277
	SRR8316904	Silver flowering stage	4.515
	SRR8316905	Silver flowering stage	4.886
	SRR8316906	Gold flowering stage	1.018
	SRR8316907	Gold flowering stage	1.099
	SRR8316908	Gold flowering stage	1.064
SRP132670	SRR6706286	Control	0.811
	SRR6706287	Light intensity 50%	1.159
	SRR6706288	Light intensity 20%	1.175
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	5.482
	CNS0095593	Slightly white alabastrum(diploid) 2	3.460
	CNS0095594	Slightly white alabastrum(diploid) 3	3.828
	CNS0095595	Whole white alabastrum(diploid) 2	7.506
	CNS0095596	Whole white alabastrum(diploid) 3	7.331
	CNS0095597	Whole white alabastrum(diploid) 4	9.040
	CNS0095598	Silvery flower (diploied) 1	3.558
	CNS0095599	Silvery flower (diploied) 2	3.247
	CNS0095600	Silvery flower (diploied) 3	7.545
	CNS0095601	Golden flower (diploid) 1	4.924
	CNS0095602	Golden flower (diploid) 2	5.598
	CNS0095603	Golden flower (diploid) 3	6.444
	CNS0095604	Slightly white alabastrum(tetraploid) 1	9.445
	CNS0095605	Slightly white alabastrum(tetraploid) 2	7.312
	CNS0095606	Slightly white alabastrum(tetraploid) 3	9.777
	CNS0095607	Whole white alabastrum(tetraploid) 1	6.001
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.094
	CNS0095609	Whole white alabastrum(tetraploid) 3	15.435
	CNS0095610	Silvery flower (tetraploid) 1	10.656
	CNS0095611	Silvery flower (tetraploid) 2	18.541
	CNS0095612	Silvery flower (tetraploid) 3	8.662
	CNS0095613	Golden flower (tetraploid) 1	9.414
	CNS0095614	Golden flower (tetraploid) 2	6.949
	CNS0095615	Golden flower (tetraploid) 3	8.458
CRA001975	CRR073297	Stem 1	11.890
	CRR073298	Stem 2	15.923
	CRR073299	Stem 3	4.213
	CRR073300	Leaf 1	12.879
	CRR073301	Leaf 2	13.294
	CRR073302	Leaf 3	6.706
	CRR073303	Juvenile bud 1	12.855
	CRR073304	Juvenile bud 2	9.392
	CRR073305	Juvenile bud 3	11.939
	CRR073306	Third green 1	12.647
	CRR073307	Third green 2	5.448
	CRR073308	Third green 3	14.438
	CRR073309	Second white 1	11.420
	CRR073310	Second white 2	27.347
	CRR073311	Second white 3	47.871
	CRR073312	Silver flowering 1	27.374
	CRR073313	Silver flowering 2	7.847
	CRR073314	Silver flowering 3	12.250
	CRR073315	Gold flowering 1	6.699
	CRR073316	Gold flowering 2	7.262
	CRR073317	Gold flowering 3	3.909
	CRR073318	Tawny withering 1	6.983
	CRR073319	Tawny withering 2	4.363
	CRR073320	Tawny withering 3	5.217