Detail information of GWHGAAZE010139


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrADD29931.17.29683E-82ribosomal protein S3 (chloroplast) [Lonicera japonica]
Swissprottr|Q332T8|RR3_LACSA7E-7330S ribosomal protein S3, chloroplastic
trEMBLtr|D3WBU6|D3WBU6_LONJA3E-8230S ribosomal protein S3, chloroplastic {ECO:0000256|HAMAP-Rule:MF_01309, ECO:0000256|RuleBase:RU003626}
TAIR10ATCG00800.19E-54structural constituent of ribosome

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123758837123759205-
GWHAAZE00000002mRNA123758837123759205-
GWHAAZE00000002exon123758837123759205-
GWHAAZE00000002CDS123758837123759205-
Transcript Sequence

Network for GWHGAAZE010139

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation
CFinderModule0205


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00189.21Ribosomal_S3_C351174.20E-29
Protein Sequence

Gene family

Gene familysubfamily
----

KEGG pathway

KO Enzyme pathway mapID
K02982RP-S3, rpsC Ribosome map03010

Gene Ontology

GO term OntologyName
GO:0006412biological_processtranslation
GO:0015935cellular_componentsmall ribosomal subunit
GO:0003735molecular_functionstructural constituent of ribosome

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf3.220
SRR3591706second leaf5.229
SRR3591707mature leaf4.927
SRR3591708Shoot apex8.925
SRR3591709Stem3.568
SRR3591710White floral bud2.202
SRR3591711White flower3.253
SRR3591712Green floral bud3.157
SRR3591713Yellow flower3.643
SRP173429 SRR8316895Juvenile bud stage 18.898
SRR8316896Juvenile bud stage 10.392
SRR8316897Juvenile bud stage 18.840
SRR8316894Third green stage 23.145
SRR8316900Third green stage 6.072
SRR8316901Third green stage 4.988
SRR8316898Complete white stage 5.976
SRR8316899Complete white stage 3.414
SRR8316903Complete white stage 8.147
SRR8316902Silver flowering stage9.168
SRR8316904Silver flowering stage12.036
SRR8316905Silver flowering stage10.197
SRR8316906Gold flowering stage 4.317
SRR8316907Gold flowering stage 3.316
SRR8316908Gold flowering stage 5.214
SRP132670SRR6706286Control0.305
SRR6706287Light intensity 50%0.337
SRR6706288Light intensity 20%0.225
CNP0000432CNS0095592Slightly white alabastrum(diploid) 124.649
CNS0095593Slightly white alabastrum(diploid) 217.192
CNS0095594Slightly white alabastrum(diploid) 322.850
CNS0095595Whole white alabastrum(diploid) 219.580
CNS0095596Whole white alabastrum(diploid) 316.956
CNS0095597Whole white alabastrum(diploid) 417.041
CNS0095598Silvery flower (diploied) 114.678
CNS0095599Silvery flower (diploied) 210.909
CNS0095600Silvery flower (diploied) 39.510
CNS0095601Golden flower (diploid) 114.501
CNS0095602Golden flower (diploid) 29.633
CNS0095603Golden flower (diploid) 38.911
CNS0095604Slightly white alabastrum(tetraploid) 120.880
CNS0095605Slightly white alabastrum(tetraploid) 218.694
CNS0095606Slightly white alabastrum(tetraploid) 315.062
CNS0095607Whole white alabastrum(tetraploid) 113.853
CNS0095608Whole white alabastrum(tetraploid) 217.726
CNS0095609Whole white alabastrum(tetraploid) 312.343
CNS0095610Silvery flower (tetraploid) 18.467
CNS0095611Silvery flower (tetraploid) 212.632
CNS0095612Silvery flower (tetraploid) 37.716
CNS0095613Golden flower (tetraploid) 19.936
CNS0095614Golden flower (tetraploid) 27.408
CNS0095615Golden flower (tetraploid) 311.620
CRA001975CRR073297Stem 17.669
CRR073298Stem 212.568
CRR073299Stem 33.223
CRR073300Leaf 17.236
CRR073301Leaf 28.261
CRR073302Leaf 36.175
CRR073303Juvenile bud 17.109
CRR073304Juvenile bud 22.463
CRR073305Juvenile bud 32.867
CRR073306Third green 14.347
CRR073307Third green 21.873
CRR073308Third green 33.743
CRR073309Second white 12.434
CRR073310Second white 28.088
CRR073311Second white 313.582
CRR073312Silver flowering 14.210
CRR073313Silver flowering 21.959
CRR073314Silver flowering 34.112
CRR073315Gold flowering 126.832
CRR073316Gold flowering 228.438
CRR073317Gold flowering 39.135
CRR073318Tawny withering 113.378
CRR073319Tawny withering 210.845
CRR073320Tawny withering 36.650