Gene detail

Detail information of GWHGAAZE010140

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD30225.1	4.2059E-174	ribosomal protein L2 (chloroplast) [Lonicera japonica]
Swissprot	tr\|A0A398\|RK2B_COFAR	2E-168	50S ribosomal protein L2-B, chloroplastic
trEMBL	tr\|D3WBS7\|D3WBS7_LONJA	2E-174	Ribosomal protein L2 {ECO:0000313\|EMBL:ADD30225.1}
TAIR10	ATCG01310.1	2E-125	ribosomal protein L2

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123760393	123761883	-
GWHAAZE00000002	mRNA	123760393	123761883	-
GWHAAZE00000002	exon	123761487	123761883	-
GWHAAZE00000002	exon	123760393	123760838	-
GWHAAZE00000002	CDS	123761487	123761883	-
GWHAAZE00000002	CDS	123760393	123760838	-

Transcript Sequence
>GWHTAAZE010152 ATGGCAATACATTTATACAAAACTTCTACCCCGAGCACACGCAATGGGACCGCAAACGGTCAAGTAAAACCCAACCCACGAAATAATTTGATCTATGGACAGCATCGTTGTGGTAAAGGTCGTAATGCCAGAGGAATCATTACCGCAGGGCATAGAGGGGGAGGTCATAAGCGTCTATACCGTAAAATTGATTTTCGACGGAATGAAAAAAACATATATGGCAGAATCGTAACCATAGAATACGACCCTAATCGAAATGCATCCATTTGTCTCATACACTATGGGGATGGTGAGAAGAGATACATTTTACATCCCAGAGGGGGCTATAATTGGAGATACCATTGTTTCTGGTACAGAAGTTCCTATAAAAATGGGAAATGCCCTACCTTTGAGTGCGAATCTACTTCAACCAATATGCCCTTAGGCACGGCCATACATAACATAGAAATGACACTTGGAAAGGGTGGACAATTAGCTAGAGCGGCGGGTGCTGTAGCAAAACTGATTTCAAAAGAGGGGAAATCGGCCACATTAAAATTACCTTCTGGGGAGGTCCGTTTGATATCCAAAAACTGCTCAGCAACAGTCGGACAAGTGGGGAATGTTAGGGTGAACCAGAAAAGTTTGGGTAGAGCCGGATCTAAGCGTTGGCTAGGTAAGCGTCCTGTAGTAAGGGGAGTAGTTATGAACCCTGTAGACCATCCCCACGGGGGTGGGGAGGGGAAGGCCCCAATTGGTAGAAAAAAACCCACAACCCCTTGGGGTTATCCTGCACTTGGAAAAAGAAGTCGAAAACGGAATAAATATAGTGATAATTTGATTCTTCGTCGCCGTAATAAATAG

Network for GWHGAAZE010140

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00181.24	Ribosomal_L2	40	107	8.20E-26
PF03947.19	Ribosomal_L2_C	138	255	5.10E-50

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02886	RP-L2, MRPL2, rplB	Ribosome	map03010

Gene Ontology

GO term	Ontology	Name
GO:0006412	biological_process	translation
GO:0005840	cellular_component	ribosome
GO:0015934	cellular_component	large ribosomal subunit
GO:0003735	molecular_function	structural constituent of ribosome
GO:0003723	molecular_function	RNA binding
GO:0016740	molecular_function	transferase activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.222
	SRR3591706	second leaf	0.812
	SRR3591707	mature leaf	0.460
	SRR3591708	Shoot apex	1.521
	SRR3591709	Stem	0.139
	SRR3591710	White floral bud	0.301
	SRR3591711	White flower	0.084
	SRR3591712	Green floral bud	0.397
	SRR3591713	Yellow flower	0.276
SRP173429	SRR8316895	Juvenile bud stage	9.534
	SRR8316896	Juvenile bud stage	6.308
	SRR8316897	Juvenile bud stage	11.335
	SRR8316894	Third green stage	15.431
	SRR8316900	Third green stage	4.723
	SRR8316901	Third green stage	3.112
	SRR8316898	Complete white stage	3.316
	SRR8316899	Complete white stage	1.266
	SRR8316903	Complete white stage	3.221
	SRR8316902	Silver flowering stage	4.990
	SRR8316904	Silver flowering stage	4.070
	SRR8316905	Silver flowering stage	5.648
	SRR8316906	Gold flowering stage	2.915
	SRR8316907	Gold flowering stage	1.917
	SRR8316908	Gold flowering stage	2.254
SRP132670	SRR6706286	Control	0.644
	SRR6706287	Light intensity 50%	0.979
	SRR6706288	Light intensity 20%	0.662
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	36.196
	CNS0095593	Slightly white alabastrum(diploid) 2	29.492
	CNS0095594	Slightly white alabastrum(diploid) 3	41.572
	CNS0095595	Whole white alabastrum(diploid) 2	25.897
	CNS0095596	Whole white alabastrum(diploid) 3	21.541
	CNS0095597	Whole white alabastrum(diploid) 4	27.072
	CNS0095598	Silvery flower (diploied) 1	20.637
	CNS0095599	Silvery flower (diploied) 2	20.085
	CNS0095600	Silvery flower (diploied) 3	4.919
	CNS0095601	Golden flower (diploid) 1	22.083
	CNS0095602	Golden flower (diploid) 2	5.008
	CNS0095603	Golden flower (diploid) 3	4.864
	CNS0095604	Slightly white alabastrum(tetraploid) 1	16.960
	CNS0095605	Slightly white alabastrum(tetraploid) 2	20.426
	CNS0095606	Slightly white alabastrum(tetraploid) 3	7.263
	CNS0095607	Whole white alabastrum(tetraploid) 1	17.073
	CNS0095608	Whole white alabastrum(tetraploid) 2	19.760
	CNS0095609	Whole white alabastrum(tetraploid) 3	5.933
	CNS0095610	Silvery flower (tetraploid) 1	3.589
	CNS0095611	Silvery flower (tetraploid) 2	5.494
	CNS0095612	Silvery flower (tetraploid) 3	4.121
	CNS0095613	Golden flower (tetraploid) 1	7.729
	CNS0095614	Golden flower (tetraploid) 2	3.416
	CNS0095615	Golden flower (tetraploid) 3	4.957
CRA001975	CRR073297	Stem 1	25.657
	CRR073298	Stem 2	32.243
	CRR073299	Stem 3	22.956
	CRR073300	Leaf 1	24.405
	CRR073301	Leaf 2	31.379
	CRR073302	Leaf 3	16.221
	CRR073303	Juvenile bud 1	22.452
	CRR073304	Juvenile bud 2	14.754
	CRR073305	Juvenile bud 3	18.609
	CRR073306	Third green 1	14.544
	CRR073307	Third green 2	10.043
	CRR073308	Third green 3	17.734
	CRR073309	Second white 1	8.654
	CRR073310	Second white 2	24.945
	CRR073311	Second white 3	19.040
	CRR073312	Silver flowering 1	14.332
	CRR073313	Silver flowering 2	6.791
	CRR073314	Silver flowering 3	12.894
	CRR073315	Gold flowering 1	80.873
	CRR073316	Gold flowering 2	67.465
	CRR073317	Gold flowering 3	21.589
	CRR073318	Tawny withering 1	23.412
	CRR073319	Tawny withering 2	35.925
	CRR073320	Tawny withering 3	16.675