Gene detail

Detail information of GWHGAAZE010146

Functional Annotation

Database	Orthologs	E value	Annotation
Nr	ADD30821.1	0	photosystem I P700 apoprotein A1 (chloroplast) [Lonicera japonica]
Swissprot	tr\|Q68S06\|PSAA_PANGI	0	Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000255\|HAMAP-Rule:MF_00458}
trEMBL	tr\|D3WBQ4\|D3WBQ4_LONJA	0	Photosystem I P700 chlorophyll a apoprotein A1 {ECO:0000256\|HAMAP-Rule:MF_00458}
TAIR10	ATCG00350.1	1E-143	Photosystem I, PsaA/PsaB protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123786858	123789158	+
GWHAAZE00000002	mRNA	123786858	123789158	+
GWHAAZE00000002	exon	123786858	123787086	+
GWHAAZE00000002	exon	123787205	123787426	+
GWHAAZE00000002	exon	123787664	123788555	+
GWHAAZE00000002	exon	123788813	123788869	+
GWHAAZE00000002	exon	123788966	123789158	+
GWHAAZE00000002	CDS	123786858	123787086	+
GWHAAZE00000002	CDS	123787205	123787426	+
GWHAAZE00000002	CDS	123787664	123788555	+
GWHAAZE00000002	CDS	123788813	123788869	+
GWHAAZE00000002	CDS	123788966	123789158	+

Transcript Sequence
>GWHTAAZE010158 ATGTTGGCGGGTTTCTTTGTATGTGTTGTCCGGAAAGAGGAGGACTCAATGATTATTCGTTCGCCGGAACCAGAAGTCAAAATTTTGGTAGATAGGGATCACATAAAAACTTCTTTCGAGGAATGGGCCAAACCCGGTCATTTCTCAAGAACAATAGCTAAAGGCCCTGATACTACCACTTGGATCTGGAACCTACATGCTGATGCTCACGATTTCGATAGCCATACCGCATGGCTAAGTGATCCGACTCACATTGGGCCGAGTGCCCAGGTGGTTTGGCCAATAGTGGGCCAAGAGATATTGAACGGTGATGTGGGCGGGGGCTTCCGAGGAATACAAATAACCTCGGGTTTCTTTCAGCTTTGGCGAGCATCTGGAATAACTAGCGAATTACAACTCTATTGTACCGCAATTGGTGCATTGATCTTTGCAGCGTTAATGCTTTTTGCTGTTTTGCCGAGGAGCAACCCCTTTTTCACCTTGAATTGGTCAAAATACGCAGACTTTCTTACTTTTCGTGGAGGATTAGATCCAGTAACTGGAGGTCTATGGCTGACCGATATTGCACACCATCATTTAGCTATTGCAATTCTTTTCCTGATAGCAGGTCATATGTATCGGACCAACTGGGGCATTGGTCATGGCCTAAAAGATATTTTAGAAGCTCATAAGGGTCCATTTACAGGCCAGGGCCATAAAGGCCTATATGAAATCCTAACAACGTCATGGCATGCTCAATTATCTCTTAACCTAGCGATGCTAGGCTCTTTAACCATTGTTGTAGCTCATCATATGTATTCCATGCCCCCTTATCCATATCTAGCTACTGACTATGGTACACAACTGTCATTGTTTACACATCACATGTGGATTGGTGGATTTCTCATAGTTGGGGCTGCTGCGCATGCAGCCATTTTTATGGTAAGAGACTATGATCCAACTACTCGATATAACGATCTATTAGATCGTGTCCTTAGGCATCGCGATGCTATCATATCACATCTCAACTGGGCATGTATATTTCTAGGTTTTCACAGTTTTGGTTTGTATATTCATAATGATACTATGAGCGCTTTAGGGCGCCCTCAAGATATGTTTTCAGATACCGCTATTCAATTACAACCCGTCTTTGCTCAATGGATCCAAAACACCCATGCTTTAGCACCCGGTGCAACGGCTCCTGGTGCAACAACAAGCACCAGTTTAACTTGGGGGGGCGGTGATTTAGTAGCAGTGGGTGGCAAAGTGGCTTTGTTACCTATTCCATTAGGAACCGCAGATTTTTTTGGTACATCACATTCATGCATTTACGATTCATGTGACCGTATTGATACTCCTGAAAGAGTTCCATTACTATTAATGGGTGGCTTCGCGATTTCTTATGGGCACAAGCATCCCAGTGGACGTGGTTATTGGCAAGAACTTATCGAATCCATCGTTTGGGCTCATAATAAATTAAAAGTTGCTCCTGCTACTCAGCCAAGAGCCTTAAGCATTGTACAAGGACGCGCTGTAGGAGTAACCCATTACCTTCTGGGTGGAATTGCCACAACGTGGGCGTTCTTCTTAGCAAGAATTATTGCAGTAGGATAA

Network for GWHGAAZE010146

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00223.20	PsaA_PsaB	48	76	3.30E-08
PF00223.20	PsaA_PsaB	76	150	1.90E-25
PF00223.20	PsaA_PsaB	156	429	7.20E-144
PF00223.20	PsaA_PsaB	467	524	9.90E-29

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02689	psaA	Metabolic pathways	map01100
K02689	psaA	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0015979	biological_process	photosynthesis
GO:0009522	cellular_component	photosystem I
GO:0009579	cellular_component	thylakoid
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.406
	SRR3591706	second leaf	1.706
	SRR3591707	mature leaf	1.172
	SRR3591708	Shoot apex	3.413
	SRR3591709	Stem	0.449
	SRR3591710	White floral bud	0.258
	SRR3591711	White flower	0.304
	SRR3591712	Green floral bud	0.432
	SRR3591713	Yellow flower	0.615
SRP173429	SRR8316895	Juvenile bud stage	18.597
	SRR8316896	Juvenile bud stage	7.550
	SRR8316897	Juvenile bud stage	24.199
	SRR8316894	Third green stage	25.159
	SRR8316900	Third green stage	2.016
	SRR8316901	Third green stage	1.448
	SRR8316898	Complete white stage	5.346
	SRR8316899	Complete white stage	0.291
	SRR8316903	Complete white stage	6.551
	SRR8316902	Silver flowering stage	10.171
	SRR8316904	Silver flowering stage	9.630
	SRR8316905	Silver flowering stage	9.057
	SRR8316906	Gold flowering stage	0.218
	SRR8316907	Gold flowering stage	0.311
	SRR8316908	Gold flowering stage	0.302
SRP132670	SRR6706286	Control	0.572
	SRR6706287	Light intensity 50%	0.593
	SRR6706288	Light intensity 20%	0.345
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	6.263
	CNS0095593	Slightly white alabastrum(diploid) 2	3.927
	CNS0095594	Slightly white alabastrum(diploid) 3	5.431
	CNS0095595	Whole white alabastrum(diploid) 2	7.601
	CNS0095596	Whole white alabastrum(diploid) 3	4.658
	CNS0095597	Whole white alabastrum(diploid) 4	6.630
	CNS0095598	Silvery flower (diploied) 1	5.340
	CNS0095599	Silvery flower (diploied) 2	7.010
	CNS0095600	Silvery flower (diploied) 3	3.378
	CNS0095601	Golden flower (diploid) 1	7.104
	CNS0095602	Golden flower (diploid) 2	2.160
	CNS0095603	Golden flower (diploid) 3	3.001
	CNS0095604	Slightly white alabastrum(tetraploid) 1	6.348
	CNS0095605	Slightly white alabastrum(tetraploid) 2	6.434
	CNS0095606	Slightly white alabastrum(tetraploid) 3	2.179
	CNS0095607	Whole white alabastrum(tetraploid) 1	5.025
	CNS0095608	Whole white alabastrum(tetraploid) 2	7.443
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.931
	CNS0095610	Silvery flower (tetraploid) 1	2.679
	CNS0095611	Silvery flower (tetraploid) 2	3.351
	CNS0095612	Silvery flower (tetraploid) 3	1.995
	CNS0095613	Golden flower (tetraploid) 1	5.377
	CNS0095614	Golden flower (tetraploid) 2	2.253
	CNS0095615	Golden flower (tetraploid) 3	1.438
CRA001975	CRR073297	Stem 1	6.155
	CRR073298	Stem 2	6.765
	CRR073299	Stem 3	1.967
	CRR073300	Leaf 1	1.477
	CRR073301	Leaf 2	2.105
	CRR073302	Leaf 3	2.154
	CRR073303	Juvenile bud 1	3.661
	CRR073304	Juvenile bud 2	2.513
	CRR073305	Juvenile bud 3	8.011
	CRR073306	Third green 1	3.897
	CRR073307	Third green 2	2.033
	CRR073308	Third green 3	4.771
	CRR073309	Second white 1	4.395
	CRR073310	Second white 2	15.577
	CRR073311	Second white 3	40.913
	CRR073312	Silver flowering 1	29.074
	CRR073313	Silver flowering 2	6.094
	CRR073314	Silver flowering 3	16.493
	CRR073315	Gold flowering 1	24.144
	CRR073316	Gold flowering 2	21.721
	CRR073317	Gold flowering 3	36.183
	CRR073318	Tawny withering 1	5.513
	CRR073319	Tawny withering 2	4.257
	CRR073320	Tawny withering 3	3.652