Gene detail

Detail information of GWHGAAZE010147

Functional Annotation

Database	Orthologs	Annotation
Nr	ADD30796.1	photosystem I P700 apoprotein A2 (chloroplast) [Lonicera japonica]
Swissprot	tr\|Q09FW2\|PSAB_NANDO	Photosystem I P700 chlorophyll a apoprotein A2 {ECO:0000255\|HAMAP-Rule:MF_00482}
trEMBL	tr\|D3WBQ5\|D3WBQ5_LONJA	Photosystem I P700 chlorophyll a apoprotein A2 {ECO:0000256\|HAMAP-Rule:MF_00482}
TAIR10	ATCG00340.1	Photosystem I, PsaA/PsaB protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123789184	123791388	+
GWHAAZE00000002	mRNA	123789184	123791388	+
GWHAAZE00000002	exon	123789184	123791388	+
GWHAAZE00000002	CDS	123789184	123791388	+

Transcript Sequence
>GWHTAAZE010159 ATGGCATTAAGATTTCCAAGGTTTAGCCAAGGCTTAGCCCAGGACCCCACTACTCGTCGTATTTGGTTTGGTATTGCTACCGCACATGACTTCGAGAGTCATGATGATATTACTGAGGAACGTCTTTATCAGAATATTTTTGCTTCTCACTTCGGGCAATTAGCAATAATTTTTCTGTGGACTTCCGGAAATCTGTTTCATGTAGCTTGGCAAGGGAATTTTGAGTCATGGGTACAGGACCCTTTACATGTAAGACCTATTGCTCATGCAATTTGGGATCCTCATTTTGGTCAACCGGCTGTAGAAGCTTTTACTCGAGGAGGTGCTCTTGGCCCAGTGAATATCGCCTATTCCGGTGTTTATCAGTGGTGGTATACAATAGGTTTACGCACTAATGAAGATCTTTATACTGGCGCCCTTTTTCTATTATTTCTTTCTGCCATATCCTTAATAGCAGGTTGGTTACACCTACAACCGAAATGGAAACCAAGCGTTTCATGGTTCAAAAATGCGGAATCTCGTCTCAATCATCATTTGTCAGGACTCTTCGGCGTAAGTTCCTTGGCTTGGACAGGACATTTAGTACATGTCGCTATTCCTGGATCCAGGGGGCAGTACGTTCGATGGAATAATTTCTTAGATGTAGTACCACATCCCCAAGGCTTAGGCCCGCTTTTTACAGGTCAGTGGAATCTTTATGCTCAAAATCCCGATTCAACTAGTCATTTATTTGGTACCTCCCAAGGAGCAGGAACTGCTATTCTAACCCTTCTCGGGGGATTTCATCCACAAACGCAAAGTTTATGGCTGACTGATATGGCTCATCATCATTTAGCTATTGCATTTATTTTTCTCGTTGCAGGGCATATGTATAGAACTAACTTCGGGATTGGGCACAGTATGAAAGATCTTTTAGATGTGCATCTTCCCCCCGGGGGGCGATTGGGACGTGGGCATAGGGGTCTTTATGACACAATCAATAATTCGATTCATTTTCAATTAGGCCTTGCCCTAGCTTCTTTAGGGGTTATTACTTCCTTGGTAGCTCAACACATGTACTCTTTACCTGCTTATGCATTCATAGCACAAGACTTTACTACTCAAGCTGCGTTATATACTCATCACCAATACATCGCAGGATTCATCATGACAGGAGCTTTTGCTCATGGAGCTATATTTTTCATTAGAGATTACAATCCGGAACAGAATGAGGATAATGTATTGGCAAGAATGTTAGACCATAAAGAAGCTATCATATCTCATTTAAGTTGGGCCAGCCTCTTTCTGGGGTTCCATACTTTGGGACTTTATGTTCATAATGATGTCATGCTTGCCTTTGGTACTCCGGAGAAACAAATCTTGATCGAACCTATATTTGCTCAATGGATACAATCTGCTCATGGTAAAACTTCCTATGGGTTCGATGTACTTTTATCTTCAACGAACGGCCCGGCATTCAATGCTGGTCGAAGCATATGGTTGCCGGGTTGGTTAAATGCTATTAATGAGAATAGTAATTCACTATTCTTAACAATAGGTCCCGGAGACTTTTTGGTTCATCATGCTATTGCTCTGGGTTTACATACAACTACATTGATCTTAGTAAAAGGTGCTTTAGATGCACGCGGTTCCAAGTTAATGCCAGATAAAAAAGATTTCGGTTATAGTTTTCCGTGCGATGGCCCGGGGCGAGGCGGTACTTGTGATATTTCGGCTTGGGACGCATTTTATTTGGCAGTTTTTTGGATGTTAAATACTATTGGATGGGTTACTTTTTATTGGCATTGGAAGCATATCACATTATGGCAGGGTAACGTTTCGCAGTTTAATGAATCTTCCACTTATTTGATGGGCTGGTTAAGAGATTATTTATGGTTAAACTCTTCACAACTTATCAATGGATATAACCCCTTTGGTATGAATAGTTTATCAGTCTGGGCGTGGATGTTCTTATTTGGACATCTTGTTTGGGCTACTGGATTTATGTTCTTAATTTCCTGGCGCGGATATTGGCAGGAATTGATTGAAACTTTAACATGGGCTCATGAGCGTACACCTTTGGCCAATTTGATTCGTTGGAGAGATAAACCGGTGGCCCTTTCTATTGTACAAGCACGATTGGTTGGATTAGCCCACTTTTCTGTAGGTTATATATTCACTTATGCAGCTTTCTTGATTGCCTCTACATCAGGCAAATTTGGTTAA

Network for GWHGAAZE010147

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00223.20	PsaA_PsaB	8	727	0

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K02690	psaB	Metabolic pathways	map01100
K02690	psaB	Photosynthesis	map00195

Gene Ontology

GO term	Ontology	Name
GO:0015979	biological_process	photosynthesis
GO:0009522	cellular_component	photosystem I
GO:0009579	cellular_component	thylakoid
GO:0016021	cellular_component	integral component of membrane

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.554
	SRR3591706	second leaf	2.652
	SRR3591707	mature leaf	3.181
	SRR3591708	Shoot apex	5.083
	SRR3591709	Stem	0.732
	SRR3591710	White floral bud	0.420
	SRR3591711	White flower	0.465
	SRR3591712	Green floral bud	0.565
	SRR3591713	Yellow flower	0.490
SRP173429	SRR8316895	Juvenile bud stage	30.878
	SRR8316896	Juvenile bud stage	13.360
	SRR8316897	Juvenile bud stage	42.921
	SRR8316894	Third green stage	46.948
	SRR8316900	Third green stage	3.160
	SRR8316901	Third green stage	2.660
	SRR8316898	Complete white stage	9.499
	SRR8316899	Complete white stage	0.559
	SRR8316903	Complete white stage	11.334
	SRR8316902	Silver flowering stage	16.513
	SRR8316904	Silver flowering stage	17.288
	SRR8316905	Silver flowering stage	15.012
	SRR8316906	Gold flowering stage	0.687
	SRR8316907	Gold flowering stage	0.829
	SRR8316908	Gold flowering stage	0.450
SRP132670	SRR6706286	Control	0.880
	SRR6706287	Light intensity 50%	0.943
	SRR6706288	Light intensity 20%	0.909
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	12.347
	CNS0095593	Slightly white alabastrum(diploid) 2	7.462
	CNS0095594	Slightly white alabastrum(diploid) 3	8.744
	CNS0095595	Whole white alabastrum(diploid) 2	13.641
	CNS0095596	Whole white alabastrum(diploid) 3	8.968
	CNS0095597	Whole white alabastrum(diploid) 4	11.167
	CNS0095598	Silvery flower (diploied) 1	10.357
	CNS0095599	Silvery flower (diploied) 2	12.275
	CNS0095600	Silvery flower (diploied) 3	5.830
	CNS0095601	Golden flower (diploid) 1	12.054
	CNS0095602	Golden flower (diploid) 2	3.546
	CNS0095603	Golden flower (diploid) 3	5.734
	CNS0095604	Slightly white alabastrum(tetraploid) 1	12.130
	CNS0095605	Slightly white alabastrum(tetraploid) 2	11.435
	CNS0095606	Slightly white alabastrum(tetraploid) 3	3.947
	CNS0095607	Whole white alabastrum(tetraploid) 1	8.384
	CNS0095608	Whole white alabastrum(tetraploid) 2	13.352
	CNS0095609	Whole white alabastrum(tetraploid) 3	3.953
	CNS0095610	Silvery flower (tetraploid) 1	4.100
	CNS0095611	Silvery flower (tetraploid) 2	5.458
	CNS0095612	Silvery flower (tetraploid) 3	3.627
	CNS0095613	Golden flower (tetraploid) 1	9.613
	CNS0095614	Golden flower (tetraploid) 2	3.963
	CNS0095615	Golden flower (tetraploid) 3	2.037
CRA001975	CRR073297	Stem 1	6.971
	CRR073298	Stem 2	8.545
	CRR073299	Stem 3	2.619
	CRR073300	Leaf 1	2.081
	CRR073301	Leaf 2	2.709
	CRR073302	Leaf 3	2.060
	CRR073303	Juvenile bud 1	4.778
	CRR073304	Juvenile bud 2	2.897
	CRR073305	Juvenile bud 3	8.096
	CRR073306	Third green 1	4.244
	CRR073307	Third green 2	2.387
	CRR073308	Third green 3	4.523
	CRR073309	Second white 1	7.803
	CRR073310	Second white 2	19.134
	CRR073311	Second white 3	54.449
	CRR073312	Silver flowering 1	35.548
	CRR073313	Silver flowering 2	7.828
	CRR073314	Silver flowering 3	21.344
	CRR073315	Gold flowering 1	34.841
	CRR073316	Gold flowering 2	36.125
	CRR073317	Gold flowering 3	53.608
	CRR073318	Tawny withering 1	6.111
	CRR073319	Tawny withering 2	4.852
	CRR073320	Tawny withering 3	4.521