Detail information of GWHGAAZE010149


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrYP_007353907.10RNA polymerase beta subunit (chloroplast) [Tectona grandis]
Swissprottr|Q68S14|RPOB_PANGI0DNA-directed RNA polymerase subunit beta {ECO:0000255|HAMAP-Rule:MF_01321}
trEMBLtr|L0TEB2|L0TEB2_TECGR0DNA-directed RNA polymerase subunit beta {ECO:0000256|HAMAP-Rule:MF_01321}
TAIR10ATCG00190.10RNA polymerase subunit beta

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123803200123805839+
GWHAAZE00000002mRNA123803200123805839+
GWHAAZE00000002exon123803200123804177+
GWHAAZE00000002exon123804298123804660+
GWHAAZE00000002exon123804925123805839+
GWHAAZE00000002CDS123803200123804177+
GWHAAZE00000002CDS123804298123804660+
GWHAAZE00000002CDS123804925123805839+
Transcript Sequence

Network for GWHGAAZE010149

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF04561.15RNA_pol_Rpb2_211295.00E-32
PF04565.17RNA_pol_Rpb2_31902581.70E-23
PF00562.29RNA_pol_Rpb2_63544495.20E-18
PF00562.29RNA_pol_Rpb2_64516604.50E-66
PF04560.21RNA_pol_Rpb2_76627375.90E-20
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K03043rpoB RNA polymerase map03020

Gene Ontology

GO term OntologyName
GO:0006351biological_processtranscription, DNA-templated
GO:0003677molecular_functionDNA binding
GO:0003899molecular_functionDNA-directed 5'-3' RNA polymerase activity
GO:0032549molecular_functionribonucleoside binding

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.029
SRR3591706second leaf0.056
SRR3591707mature leaf0.087
SRR3591708Shoot apex0.266
SRR3591709Stem0.044
SRR3591710White floral bud0.033
SRR3591711White flower0.015
SRR3591712Green floral bud0.054
SRR3591713Yellow flower0.066
SRP173429 SRR8316895Juvenile bud stage 0.552
SRR8316896Juvenile bud stage 0.212
SRR8316897Juvenile bud stage 0.974
SRR8316894Third green stage 1.314
SRR8316900Third green stage 0.222
SRR8316901Third green stage 0.259
SRR8316898Complete white stage 0.333
SRR8316899Complete white stage 0.153
SRR8316903Complete white stage 0.414
SRR8316902Silver flowering stage0.590
SRR8316904Silver flowering stage0.515
SRR8316905Silver flowering stage0.421
SRR8316906Gold flowering stage 0.052
SRR8316907Gold flowering stage 0.120
SRR8316908Gold flowering stage 0.040
SRP132670SRR6706286Control0.047
SRR6706287Light intensity 50%0.054
SRR6706288Light intensity 20%0.043
CNP0000432CNS0095592Slightly white alabastrum(diploid) 10.801
CNS0095593Slightly white alabastrum(diploid) 20.247
CNS0095594Slightly white alabastrum(diploid) 30.292
CNS0095595Whole white alabastrum(diploid) 20.773
CNS0095596Whole white alabastrum(diploid) 30.632
CNS0095597Whole white alabastrum(diploid) 40.685
CNS0095598Silvery flower (diploied) 10.208
CNS0095599Silvery flower (diploied) 20.481
CNS0095600Silvery flower (diploied) 30.357
CNS0095601Golden flower (diploid) 10.704
CNS0095602Golden flower (diploid) 20.226
CNS0095603Golden flower (diploid) 30.227
CNS0095604Slightly white alabastrum(tetraploid) 10.545
CNS0095605Slightly white alabastrum(tetraploid) 20.394
CNS0095606Slightly white alabastrum(tetraploid) 30.277
CNS0095607Whole white alabastrum(tetraploid) 10.309
CNS0095608Whole white alabastrum(tetraploid) 20.442
CNS0095609Whole white alabastrum(tetraploid) 30.290
CNS0095610Silvery flower (tetraploid) 10.270
CNS0095611Silvery flower (tetraploid) 20.327
CNS0095612Silvery flower (tetraploid) 30.332
CNS0095613Golden flower (tetraploid) 10.413
CNS0095614Golden flower (tetraploid) 20.437
CNS0095615Golden flower (tetraploid) 30.104
CRA001975CRR073297Stem 10.308
CRR073298Stem 20.132
CRR073299Stem 30.041
CRR073300Leaf 10.131
CRR073301Leaf 20.177
CRR073302Leaf 30.121
CRR073303Juvenile bud 10.247
CRR073304Juvenile bud 20.306
CRR073305Juvenile bud 30.533
CRR073306Third green 10.336
CRR073307Third green 20.080
CRR073308Third green 30.199
CRR073309Second white 10.055
CRR073310Second white 20.992
CRR073311Second white 31.600
CRR073312Silver flowering 11.187
CRR073313Silver flowering 20.212
CRR073314Silver flowering 30.227
CRR073315Gold flowering 10.874
CRR073316Gold flowering 20.947
CRR073317Gold flowering 30.248
CRR073318Tawny withering 10.236
CRR073319Tawny withering 20.237
CRR073320Tawny withering 30.218