Detail information of GWHGAAZE010157


Functional Annotation

DatabaseOrthologsE valueAnnotation
NrAFB74221.13.0636E-141NADH dehydrogenase subunit 2, partial (chloroplast) [Didierea madagascariensis]
Swissprottr|P0CC55|NU2C2_DAUCA1E-140NAD(P)H-quinone oxidoreductase subunit 2 B, chloroplastic {ECO:0000255|HAMAP-Rule:MF_00445}
trEMBLtr|H6T8L4|H6T8L4_9CARY1E-141NADH dehydrogenase subunit 2 {ECO:0000313|EMBL:AFB74221.1} (Fragment)
TAIR10ATCG01250.15E-81NADH-Ubiquinone/plastoquinone (complex I) protein

Location And Transcript Sequence (JBrowse)

ScaffoldTypeStartEndStrand
GWHAAZE00000002gene123839072123839728-
GWHAAZE00000002mRNA123839072123839728-
GWHAAZE00000002exon123839072123839728-
GWHAAZE00000002CDS123839072123839728-
Transcript Sequence

Network for GWHGAAZE010157

Network categoryNetworkTop300 PCC genelist
Coexpression PositiveNetworkTop300 PCC genelist
Coexpression NegativeNetworkTop300 PCC genelist


Functional Module

Module IDFunction Annotation


Protein Structure

Pfam accessionPfam nameAlignment startAlignment endE-value
PF00361.21Proton_antipo_M11361.90E-41
Protein Sequence

Gene family

Gene familysubfamily
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KEGG pathway

KO Enzyme pathway mapID
K05573ndhB Metabolic pathways map01100
Oxidative phosphorylationmap00190

Gene Ontology

GO term OntologyName

Expression pattern


Expression pattern detail

SRPSampleDescriptionTPM
SRP075780SRR3591705youngest leaf0.818
SRR3591706second leaf1.247
SRR3591707mature leaf1.720
SRR3591708Shoot apex1.187
SRR3591709Stem0.341
SRR3591710White floral bud0.359
SRR3591711White flower0.156
SRR3591712Green floral bud0.127
SRR3591713Yellow flower0.099
SRP173429 SRR8316895Juvenile bud stage 4.282
SRR8316896Juvenile bud stage 2.266
SRR8316897Juvenile bud stage 6.066
SRR8316894Third green stage 5.726
SRR8316900Third green stage 1.136
SRR8316901Third green stage 0.886
SRR8316898Complete white stage 1.306
SRR8316899Complete white stage 0.200
SRR8316903Complete white stage 1.428
SRR8316902Silver flowering stage1.999
SRR8316904Silver flowering stage2.630
SRR8316905Silver flowering stage2.055
SRR8316906Gold flowering stage 0.655
SRR8316907Gold flowering stage 0.634
SRR8316908Gold flowering stage 0.499
SRP132670SRR6706286Control0.189
SRR6706287Light intensity 50%0.000
SRR6706288Light intensity 20%0.022
CNP0000432CNS0095592Slightly white alabastrum(diploid) 12.097
CNS0095593Slightly white alabastrum(diploid) 22.276
CNS0095594Slightly white alabastrum(diploid) 33.085
CNS0095595Whole white alabastrum(diploid) 21.879
CNS0095596Whole white alabastrum(diploid) 31.621
CNS0095597Whole white alabastrum(diploid) 42.402
CNS0095598Silvery flower (diploied) 11.739
CNS0095599Silvery flower (diploied) 22.140
CNS0095600Silvery flower (diploied) 34.063
CNS0095601Golden flower (diploid) 12.599
CNS0095602Golden flower (diploid) 24.065
CNS0095603Golden flower (diploid) 34.833
CNS0095604Slightly white alabastrum(tetraploid) 12.539
CNS0095605Slightly white alabastrum(tetraploid) 21.728
CNS0095606Slightly white alabastrum(tetraploid) 33.619
CNS0095607Whole white alabastrum(tetraploid) 11.253
CNS0095608Whole white alabastrum(tetraploid) 22.084
CNS0095609Whole white alabastrum(tetraploid) 33.178
CNS0095610Silvery flower (tetraploid) 12.299
CNS0095611Silvery flower (tetraploid) 26.320
CNS0095612Silvery flower (tetraploid) 33.892
CNS0095613Golden flower (tetraploid) 12.584
CNS0095614Golden flower (tetraploid) 22.044
CNS0095615Golden flower (tetraploid) 33.686
CRA001975CRR073297Stem 15.375
CRR073298Stem 27.791
CRR073299Stem 32.750
CRR073300Leaf 15.567
CRR073301Leaf 24.639
CRR073302Leaf 31.050
CRR073303Juvenile bud 12.205
CRR073304Juvenile bud 21.699
CRR073305Juvenile bud 31.720
CRR073306Third green 11.906
CRR073307Third green 20.995
CRR073308Third green 31.829
CRR073309Second white 13.367
CRR073310Second white 26.586
CRR073311Second white 37.145
CRR073312Silver flowering 14.848
CRR073313Silver flowering 21.424
CRR073314Silver flowering 31.612
CRR073315Gold flowering 119.457
CRR073316Gold flowering 251.472
CRR073317Gold flowering 325.205
CRR073318Tawny withering 12.314
CRR073319Tawny withering 23.593
CRR073320Tawny withering 33.139