Gene detail

Detail information of GWHGAAZE010159

Functional Annotation

Database	Orthologs	Annotation
Nr	ADD31356.1	NADH-plastoquinone oxidoreductase subunit 5 protein (chloroplast) [Lonicera japonica]
Swissprot	tr\|Q68RV9\|NU5C_PANGI	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
trEMBL	tr\|D3WBP2\|D3WBP2_LONJA	NADH-plastoquinone oxidoreductase subunit 5 protein {ECO:0000313\|EMBL:ADD31356.1}
TAIR10	ATCG01010.1	NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein

Location And Transcript Sequence (JBrowse)

Scaffold	Type	Start	End	Strand
GWHAAZE00000002	gene	123854284	123856545	+
GWHAAZE00000002	mRNA	123854284	123856545	+
GWHAAZE00000002	exon	123854284	123856545	+
GWHAAZE00000002	CDS	123854284	123856545	+

Transcript Sequence
>GWHTAAZE010171 ATGGAACAGACATCTCAATATGCATGGATAATACCCTTCTTGCCACTTCCAGTTCCTATGCTAATAGGACTGGGACTTCTTCTTTTTCCGACAGCAACAAAAAATTTTCGTCGTATGTGGGCTTTTCAGAGTGTTTTATTATTAAGTATAGTCATGATTTTTTCGATGAATCTATCTATTCAGCAACTAAATAGCAGTTCTATCTATCAATATGTATGGTCTTGGATCATCAATAATGATTTTTCTTTTGAATTAGGCTACTTGATTGATCCACTTACTACTATTATGTCAATATTAATCACTACTGTTGGAATTATGGTTCTTGTTTATAGTGATAATTATATGTCTCATGATCAAGGATATTTAAGATTTTTTGCTTATATGAGTTTTTTCAGTAGTTCTATGTTGGGATTAGTTACTAGTTCTAATTTGATACAAATTTATATTTTTTGGGAATTAGTTGGAATGTGTTCGTATCTATTGATAGGGTTTTGGTTCACACGACCTGTTGCAGCAAATGCTTGTCAAAAAGCGTTTGTAACTAATCGTGTTGGGGATTTTGGTTTATTATTAGGAATTTTAGGTTTTTATTGGCTAACGGGCAGTTTCGAATTTAGGGATTTATTCGAAATATTCAATAACTTGATTTATAATAATGAGGTCCATTTTTTATTTGTTATTTTGTGTGCCGTTCTTTTTTTTGCAGGCGCAGTTGCTAAATCTGCACAATTTCCCCTCCATGTATGGTTACCCGATGCCATGGAGGGCCCTACTCCTATTTCGGCTCTTATACATGCTGCTACTATGGTAGCAGCGGGAGTTTTTCTTGTAGCTCGGCTTCTTCCTCTTTTCATAATCATACCTTACATAATGAATTTAATCTCTTTACTAGGGATAATAACAGTATTATTAGGGGCTACTTTAGCTCTCGCTCAAAAAGATATTAAGAGGGGTTTAGCCTATTCCACAATGTCTCAATTGGGATATATGATGTTAGCTCTAGGTATGGGGTCTTATCGCAGTGCTTTATTTCATTTAATTACTCATGCTTTTTCGAAAGCATTATTGTTTTTAGGATCTGGATCCATTATTCATGCAATGGAAACTATTGTTGGATATTCGCCAAATAAAAGTCAGAATATGGCTCTTATGGGAGGTTTAACAAAACATGTGCCGATTACCAAAACCGCTTTTTTATTAGGTACACTTTCTCTTTGTGGTATTCCACCCCTTGCTTGTTTTTGGTCCAAGGATGAAATTCTTAATGATAGTTGGTTGTATTCACCGATTTTCGCAATAATAGCTTGGTCTACAGCGGCATTAACCGCATTTTATATGTTTCGGATCTATTTACTTACTTTTGAAGGACACTTAAACGCTAATTTTCAAAATTACAGTGGAAAAAAAAATAAACCCTTCGATTCAATATCTCTATGGGGTAAAGAAGGTTCGAAAAGGATTAAAAAAAAAAATGGTTTATTAACTTTATTAACAATAAATAATAAAGTAAGTACTTCTTTTTTTTCAAAGAAGACATATCAACTTGATGAGAATGTAAGAAACATGACACAACCTTTTATTACTATTATTCATTTGGGGAATAAGAAGTCTTATTTATATCCTTATGAATCGGATAATACTATGTTATTCCCAATACTTGTATTGGGTCTATTTACTTTGTTCGTTGGATTCCTAGGAATTCCTTTCAATCAAGAAGGAGTGAATTTAGATATATTATCAAAATGGTTAACCCCATATATAAACCTTTTACATCCAAATTTGAATAATTCAATGGATTGGTATGAATTTGCGAAAGATGCAGTTTTTTCAGTCAGTATAGCCTATTTCGGAATAGTTATAGCGTCCCTTTTATATAAACCTGTTTATTCATCTTTTCAAAATTTGTACTTAATTAATTCATTTGTTAAAACAGGGACTAAGAGAATTCTTTCGGACAAAATCATAAATGGTCTATATGATTGGTCATATAATCGTGGTTACATAGATGCTTTTTATGCAACATCCTTAACCGGGGGTATAAGAGGATTGGCGGAATTTACTCATTTTTTTGATAGACGAGTAATTGATGGAATTACGAATGGAGTTGGTATTATGAGTTTCTTTGTAGGAGAGGGTATCAAATCTGTTGGGGGCGGGCGTATCTCTTCTTATCTTTTCTTGTATTTATCGTATGTATCCATTTTTTTATTAATTTACTACTTACTACTTTTTGAATCTATAAGAAGAATCTTTCTTTTTTAA

Network for GWHGAAZE010159

Network category	Network	Top300 PCC genelist
Coexpression Positive	Network	Top300 PCC genelist
Coexpression Negative	Network	Top300 PCC genelist

Functional Module

Module ID	Function Annotation

Protein Structure

Pfam accession	Pfam name	Alignment start	Alignment end	E-value
PF00662.21	Proton_antipo_N	72	129	6.20E-19
PF00361.21	Proton_antipo_M	141	442	2.00E-98
PF01010.20	Proton_antipo_C	448	691	3.70E-117

Protein Sequence

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	pathway	mapID
K05577	ndhF	Metabolic pathways	map01100
K05577	ndhF	Oxidative phosphorylation	map00190

Gene Ontology

GO term	Ontology	Name
GO:0042773	biological_process	ATP synthesis coupled electron transport
GO:0055114	biological_process	oxidation-reduction process
GO:0008137	molecular_function	NADH dehydrogenase (ubiquinone) activity

Expression pattern

Expression pattern detail

SRP	Sample	Description	TPM
SRP075780	SRR3591705	youngest leaf	0.418
	SRR3591706	second leaf	1.052
	SRR3591707	mature leaf	2.341
	SRR3591708	Shoot apex	2.517
	SRR3591709	Stem	0.469
	SRR3591710	White floral bud	0.373
	SRR3591711	White flower	1.129
	SRR3591712	Green floral bud	0.716
	SRR3591713	Yellow flower	0.871
SRP173429	SRR8316895	Juvenile bud stage	3.730
	SRR8316896	Juvenile bud stage	1.651
	SRR8316897	Juvenile bud stage	4.948
	SRR8316894	Third green stage	4.263
	SRR8316900	Third green stage	1.110
	SRR8316901	Third green stage	1.099
	SRR8316898	Complete white stage	1.501
	SRR8316899	Complete white stage	0.944
	SRR8316903	Complete white stage	1.010
	SRR8316902	Silver flowering stage	2.378
	SRR8316904	Silver flowering stage	2.503
	SRR8316905	Silver flowering stage	1.651
	SRR8316906	Gold flowering stage	1.507
	SRR8316907	Gold flowering stage	0.967
	SRR8316908	Gold flowering stage	1.046
SRP132670	SRR6706286	Control	0.196
	SRR6706287	Light intensity 50%	0.293
	SRR6706288	Light intensity 20%	0.192
CNP0000432	CNS0095592	Slightly white alabastrum(diploid) 1	3.410
	CNS0095593	Slightly white alabastrum(diploid) 2	2.895
	CNS0095594	Slightly white alabastrum(diploid) 3	3.698
	CNS0095595	Whole white alabastrum(diploid) 2	4.599
	CNS0095596	Whole white alabastrum(diploid) 3	3.198
	CNS0095597	Whole white alabastrum(diploid) 4	3.249
	CNS0095598	Silvery flower (diploied) 1	2.647
	CNS0095599	Silvery flower (diploied) 2	1.820
	CNS0095600	Silvery flower (diploied) 3	1.692
	CNS0095601	Golden flower (diploid) 1	2.187
	CNS0095602	Golden flower (diploid) 2	1.247
	CNS0095603	Golden flower (diploid) 3	1.244
	CNS0095604	Slightly white alabastrum(tetraploid) 1	3.315
	CNS0095605	Slightly white alabastrum(tetraploid) 2	1.764
	CNS0095606	Slightly white alabastrum(tetraploid) 3	1.030
	CNS0095607	Whole white alabastrum(tetraploid) 1	2.168
	CNS0095608	Whole white alabastrum(tetraploid) 2	2.514
	CNS0095609	Whole white alabastrum(tetraploid) 3	1.413
	CNS0095610	Silvery flower (tetraploid) 1	1.224
	CNS0095611	Silvery flower (tetraploid) 2	0.907
	CNS0095612	Silvery flower (tetraploid) 3	0.954
	CNS0095613	Golden flower (tetraploid) 1	1.694
	CNS0095614	Golden flower (tetraploid) 2	1.413
	CNS0095615	Golden flower (tetraploid) 3	1.024
CRA001975	CRR073297	Stem 1	0.860
	CRR073298	Stem 2	1.631
	CRR073299	Stem 3	0.549
	CRR073300	Leaf 1	0.959
	CRR073301	Leaf 2	0.937
	CRR073302	Leaf 3	0.420
	CRR073303	Juvenile bud 1	0.609
	CRR073304	Juvenile bud 2	0.550
	CRR073305	Juvenile bud 3	0.792
	CRR073306	Third green 1	0.349
	CRR073307	Third green 2	0.245
	CRR073308	Third green 3	0.717
	CRR073309	Second white 1	0.477
	CRR073310	Second white 2	2.183
	CRR073311	Second white 3	2.543
	CRR073312	Silver flowering 1	3.442
	CRR073313	Silver flowering 2	0.375
	CRR073314	Silver flowering 3	1.793
	CRR073315	Gold flowering 1	15.627
	CRR073316	Gold flowering 2	13.552
	CRR073317	Gold flowering 3	8.863
	CRR073318	Tawny withering 1	2.132
	CRR073319	Tawny withering 2	1.302
	CRR073320	Tawny withering 3	0.617